UFO09960.5prime Sequence
1130 bp (997 high quality bases) assembled on 2011-10-17
> UFO09960.5prime
CAGTCGACATGGAGCGACAGAGGCGGCAGGAGATGGAACTACGTCTCCAG
CAACAGCGAGAGCAGGCTGCCCAAGTCAATAACTTTATACACGCTCCCCA
GTCTGTCTTTCGACCCATTGAAAATGAAACGCAACCGCAACCGGGTATTT
ACAAGCCCATAGCTCATAAATCTCAACCCAATCCAGCCGTTTGGAAACCA
CCAACGCAGCAATCACAACCACCGCAGCAATCGCAGCAACATTTGCAACC
GAGATCGGCTACTACATATAGCAATACCCCCTCGCCATCCTCAACGGCCA
CCTCACCCATCGGATTGCCCTGGGTGGCAAAACCGAAGGTGGACAATAGC
GATTTTCGACGCAAAGCGCACCACTTTGAAGAGAGGTCCTTGAGGGATAA
CATCGAACAACAGCAACAGCCAACGTATCCCAATGGCAACAATGGTTATT
TGCAGCGTCACAATTCCCTGCGCTCGAAAGCACCAGCATTGAGTGAGTTT
AAGAAGAGGCCATCCTTGCCGAATGCCATGGACCCGGGAACAGCTGCACC
ACCGCGACAGGTGTATCAAGCTCCACCGCCACCCACGAATATCTCATTTA
CGTACGCCGATTTCCCGCCAGTTCGACGTCCACAAGGTGCTAGTGCTCAC
AACTACAGGAGTCAACCTTGCCTAACAAGTGCTGTGGATCAGGTCGAGGC
ATTGACCAATCCCCTGGGTGCACCTCTAGTGCTCACAAGCTCAAATCCCA
CTTATCTGCCGCCACCTGGAAAGCAGAAGATTCGACTACATCAGCAGTCC
AGTCGATGTGGATGCGGATAGTCCACCTAATAGTCCCACGAGCTTCATGA
CCATGCCCAATCCCACTTTGATGACGGACAATACGGACGATGATCTCGAT
TTGGATTCGGATAACATATGCTGGAGTACCGGGCCGAAACAAAGGTGATG
CGAAAGCCAACGCAGCCAAACGGCAGTAAAGGGTGGCGGACAGAAGAAAC
CCCTCCACATGATGACGATGAAGTCTATGGAAAGAACTCAGGGCAGCCAA
GTCCTTTGCCTCTACACGAATGAAGCAGCTAGGAGGTGGTCTGCCAATGC
CTCATGGCAAATAGCGGCAAGAGCACCTAC
UFO09960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34417-RU | 17577 | CG34417-RU | 12449..13560 | 9..1123 | 5180 | 98.3 | Plus |
| CG34417-RT | 16863 | CG34417-RT | 12449..13560 | 9..1123 | 5180 | 98.3 | Plus |
| CG34417-RR | 16701 | CG34417-RR | 12449..13560 | 9..1123 | 5180 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6580292..6581383 | 9..1104 | 4895 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:27:04 has no hits.
UFO09960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:32 Download gff for
UFO09960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34417-RJ | 12440..13560 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:13 Download gff for
UFO09960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34417-RR | 12440..13560 | 1..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:02 Download gff for
UFO09960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34417-RR | 12440..13560 | 1..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:02 Download gff for
UFO09960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6580283..6581403 | 1..1123 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:13 Download gff for
UFO09960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6474316..6475436 | 1..1123 | 97 | | Plus |
