UFO09961.5prime Sequence
1105 bp (977 high quality bases) assembled on 2011-10-17
> UFO09961.5prime
CAGTCGACATGTCCCGCCAACGAAGGATCTTCGGTAACAATGGAGCTCCC
ACTGCCTCATTGGCATCAATTGCAAATGTTCTAGAGTTTATGGATGCACA
CGACGTTATAAGTTTGGCCCTGGAGCAGTCGAGATTGGCATTCGAAAACC
AGCGGATGGACAACATGATGGACTTCCATGGGAATGGTAGCAGTAGCTCG
CATCAGCAGCAGCAACTGACAGCTTTCCATGCGCCACCACCTGCTTTGCG
TCACAAGCTAGCAGGTATTGGTGCTGGGCGGTTGACGGTTCACAAGTGGC
CATATCTTCCCGTCGGTTTCACCCGTAGCAATAAGGAGATTGTACGCACC
ATGAATGCTATACAGCCGATGCTGCAGAATGCATTCCATTGCAAATCCAG
GGGCGGCTCAGGTTCCAAGGATGCCAGTTCGTACAATACGGTGAGTGGAC
CGCTAACCTGGCGCCAATTCCATCGACTGGCAGGCCGTGCATCCGGACAA
TGTGAGCCGCAACCGATACCATCCGTGGTGGTGGGCTACGAGAAGGATTG
GATCTCGGTGGCACCGCACTCCATCCACTATTGGGATAAGTTTCTCCTGG
AACCGTACTCCTATGCCAGGGATGTTGTATACGTGGTAGTGTGTCCGGAC
AACGAGCATGTGGTAAATTGTACTCGCAGCTATTTCCGGGAACTAAGCAG
CACCTACGAGATGTGCAAGCTGGGCAAACACACACCCATCCGAGGATGGG
ATGGTTTCCTTCAAGTAGGCGCTGCTCGCAACAACGTGCCTGCGGATCGG
GAAACAACTCCCTTGGATGATTGGCTGCGTACCCTGAACATGCTGCTCTG
GCGGAGCAAATCCGTCGGTATGCAGTTGCCTTTTATTCACCAGTTGGCTC
ATACCTAAGTCGAGTGCCAAATGATAAACGCCTGTTGAATCCACCAGATG
GCAGTGGCACTCACACTCTAAAGGAGGAGCTCTGCTCCTCGAATAGCTCT
TCAGTCAGCGATTGCAGGCGGGGACTTAACCCACGGATAAATATAAGCTT
GAGCCCAGGTACAGAACTACAAGTTCATCGAATGAACATATCGAAATAAA
CACGG
UFO09961.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| skd-RF | 9982 | CG9936-RF | 5587..6683 | 9..1100 | 5000 | 97.8 | Plus |
| skd-RE | 10703 | CG9936-RE | 6308..7404 | 9..1100 | 5000 | 97.8 | Plus |
| skd-RD | 10465 | CG9936-RD | 6070..7166 | 9..1100 | 5000 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20997640..20998709 | 1074..9 | 4730 | 98.2 | Minus |
Blast to na_te.dros performed 2014-11-27 00:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 5468..5548 | 1023..1104 | 110 | 62.7 | Plus |
UFO09961.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:40 Download gff for
UFO09961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RE | 6503..7589 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:09 Download gff for
UFO09961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RD | 6063..7149 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:43 Download gff for
UFO09961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skd-RD | 6063..7149 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:43 Download gff for
UFO09961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20997630..20998715 | 1..1084 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:09 Download gff for
UFO09961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20990730..20991815 | 1..1084 | 97 | | Minus |
