UFO09962.5prime Sequence
1096 bp (948 high quality bases) assembled on 2011-10-17
> UFO09962.5prime
CAGTCGACATGGGCTTCTCATCAGCCCTCCAAAGTCGCGCCGCCCACGAG
GCGCTGATCGTCCGCCAGGATGCCGAACTCCGGCTAATGGAGACAATGAA
GCGATCCATCCAGATGAAGGCCAAGTGCGACAAGGAGTACGCCATCAGCC
TGACCGCTGTGGCCCAGCAGGGTCTCAAGATCGATCGGGCTGACGAAATG
CAAGGCAGCCTGATCTCCAAATCCTGGCGATCCTACATGGATGAACTGGA
CCACCAGGCCAAACAGTTCAAGTTCAACGCGGAGCAGCTGGAGGTCGTCT
GCGATAAGTTGACCCACCTCTCGCAGGACAAACGGAAGGCCAGAAAGGCC
TACCAGGAGGAGCATGCCAAGATCGCAGCACGCCTGAATCATCTCACCGA
CGAGGTGGTGCGCAAGAAATCTGAATACCAAAAACATTTGGAGGGCTACA
AGGCGCTGCGCACGCGCTTCGAGGAGAACTACATAAAGGCACCCAGTCGC
AGTGGCCGCAAGCTGGACGATGTGCGTGACAAGTATCAGAAGGCCTGCCG
CAAATTGCATCTCACACACAACGAGTACGTGCTGTCCATCACGGAAGCCA
TCGAAGTGGAGAAGGACTTTCGCAACGTCTTGCTGCCGGGACTGCTGGAG
CATCAGCAGTCCGTTCACGAGAGCTTCATCCTGCTGTGGCGCAACATCCT
GCAGAGGCGGCCCAGTATGGCGACCTCACGGCCGACAAGTACAAGGAGAT
CCAGAAGCGCATTGACACTGTGATAGGGAGCATCAATCCGACCCGAGGAG
TACGGCGAGTTCACCGAGAAATACAAAACCTCTCCCACAACACCGGCTGC
TTCTTCCAGTTCGATGAGGACGCTCATCCAGGGATAATTCCCGGCCAATT
GCAGTCGAGCAACATTTGGACAGGTGGGACCAACCTCACCGGGTGGAACT
GGCTGCGTAAATCGTTCTCCAAGGAAACTGGGAGGGGAGTCCGTCCAGGG
ATTTGCCAGGAGAGCAGATGGAGATGGATCGAGCTGTGTGAATGGGTGGC
TCCGCCGGGTGGCCAATGGCCACCATTATTATTCCAACGGGCAGCA
UFO09962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FER-RF | 3599 | CG8874-RF | 342..1399 | 8..1096 | 4525 | 96.3 | Plus |
| FER-RE | 3596 | CG8874-RE | 342..1399 | 8..1096 | 4525 | 96.3 | Plus |
| FER-RB | 3395 | CG8874-RB | 342..1399 | 8..1096 | 4525 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9373331..9373668 | 826..489 | 1580 | 99.1 | Minus |
| 3R | 32079331 | 3R | 9392740..9392937 | 205..8 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 9390886..9391075 | 392..203 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 9373779..9373875 | 489..393 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:28:47 has no hits.
UFO09962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:41 Download gff for
UFO09962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fps85D-RB | 333..1298 | 1..986 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:17 Download gff for
UFO09962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fps85D-RB | 336..1301 | 1..986 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:49 Download gff for
UFO09962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FER-RB | 336..1301 | 1..986 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:49 Download gff for
UFO09962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9373331..9373667 | 490..826 | 99 | <- | Minus |
| 3R | 9373779..9373875 | 393..489 | 100 | <- | Minus |
| 3R | 9390886..9391073 | 205..392 | 100 | <- | Minus |
| 3R | 9392741..9392940 | 1..204 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:17 Download gff for
UFO09962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5199053..5199389 | 490..826 | 99 | <- | Minus |
| arm_3R | 5199501..5199597 | 393..489 | 100 | <- | Minus |
| arm_3R | 5216608..5216795 | 205..392 | 100 | <- | Minus |
| arm_3R | 5218463..5218662 | 1..204 | 98 | | Minus |
