UFO09964.5prime Sequence
1144 bp (1002 high quality bases) assembled on 2011-10-17
> UFO09964.5prime
CAGTCGACATGAGTAGCGCTGCCGCGGCTGCTGCGGGTGCCGCTGGTGGA
GGAGCCCTGTTCCAACCACAATCGGTCAGCACGGCCAATAGCAGTAGTAG
TAACAATAACAATTCAAGCACACCGGCTGCTCTTGCCACCCATTCGCCCA
CGAGCAACTCACCAGTTTCGGGCGCCAGTTCGGCATCGTCCTTGTTGACG
GCCGCCTTTGGCAACCTGTTTGGTGGCTCCTCGGCCAAGATGCTGAACGA
GCTGTTTGGCCGCCAGATGAAGCAGGCCCAGGACGCAACGAGTGGCCTGC
CCCAGAGTTTGGACAACGCCATGCTGGCCGCCGCCATGGAGACGGCCACC
AGTGCCGAGCTGTTGATCGGCAGCCTCAATTCCACGTCCAAGTTGCTGCA
GCAGCAGCACAATAACAACAGCATTGCTCCCGCCAATAGCACGCCCATGA
GCAATGGCACAAATGCATCGATCTCGCCGGGATCGGCCCACAGTTCCAGT
CACTCGCATCAGGGAGTCTCGCCCAAAGGAAGTCGCAGGGTGTCGGCCTG
CAGTGATCGCTCCTTGGAGGCGGCAGCTGCTGATGTTGCTGGTGGCTCGC
CGCCACGAGCGGCATCGGTGAGCTCGCTGAACGGAGGAGCCAGCAGTGAG
GAGCAGCACCAGTCTCAGTTGCAACACGACCTGGTGGCACATCACATGCT
GCGCAATATACTGCAGGGCAAGAAGGAGCTGATGCAACTGGATCACGAGC
TGCGCACCGCCATGCAGCAGCAGCAACAGCAGCTGCAAGGAGAAAGGAGC
AACTGCACTCCCAAGCTTAACAATAATAATAACAACAATATTGCTGCCAC
CGCCCAACAACAATAACACACCACAATGGAGGAGTATCAATCTGATCGAC
GATTCGGAAATGGCTGACATCAAGATCAGGAGTGAGCCCCAGACGGCTCC
GCAGCCACAGCATCGCCGCCACGGAAGCAGCCACCAGCAGCCGGAGGTGG
GGAGGCGGCAGTGGGGGGGCCACAGGCAGCATGGGCAGGGCGATGGGCAG
CCTGGCGACGCAAGGTTCCTCGGACTCCCTGGGAACAGGCCACGGGGGGC
GCAGGGACGAAGGCGCAAGGGAACGAGGGAAAGGCTCGGGCCTC
UFO09964.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pros-RM | 22289 | CG17228-RM | 2547..3616 | 8..1097 | 4795 | 97.2 | Plus |
| pros-RL | 5526 | CG17228-RL | 302..1371 | 8..1097 | 4795 | 97.2 | Plus |
| pros-RK | 7890 | CG17228-RK | 302..1371 | 8..1097 | 4795 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11373089..11374061 | 8..984 | 4455 | 98.5 | Plus |
Blast to na_te.dros performed 2014-11-27 00:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6672..6921 | 590..837 | 207 | 57.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6929 | 718..901 | 193 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2476 | 721..868 | 170 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..7013 | 641..867 | 163 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6945 | 737..992 | 159 | 54.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2458 | 717..868 | 151 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2505..2657 | 641..788 | 141 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2813..2944 | 734..868 | 136 | 59.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1161 | 764..837 | 121 | 66.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1083..1155 | 721..796 | 120 | 65.8 | Plus |
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 700..783 | 791..877 | 120 | 65.9 | Plus |
UFO09964.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:41 Download gff for
UFO09964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RJ | 295..1301 | 1..1015 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:24 Download gff for
UFO09964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RK | 295..1301 | 1..1015 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:54 Download gff for
UFO09964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pros-RK | 295..1301 | 1..1015 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:54 Download gff for
UFO09964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11373082..11374088 | 1..1015 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:24 Download gff for
UFO09964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7198804..7199810 | 1..1015 | 98 | | Plus |
