UFO09965.5prime Sequence
1113 bp (950 high quality bases) assembled on 2011-10-17
> UFO09965.5prime
CAGTCGACATGCAAAACGATATGGTCAGCATACCGGTGGCCAATTTGAAC
GGCGGCCTTAAAGCGGCCAGCAGCGGTTCCGGAGTTGGTGTAGTGACCTC
CGGCGGCGTCGTATCCTCGGCGGTGCTGGCCAATGCCCCACGTGTATACC
TAACGCCCTCCTCCACATTCATGACCAATCGCCAAATGGCGGGAGTGGCG
TCCACCGGAAGAATGAGCGGACAAGTCGTCGGTGGTTCATCTGGCACAGC
CTCAACAGCCGGTACCGTTCGCTATTTTTCGCAATTCAGCAAAATGCAAA
CGGCCGGCGGACCCAGTTTGCAAAGGAAACTTGCCAACGGGGATACCATT
GTTCTGGCAACCGGCAGTAAAAATATGTTCCTTACTAGCAGCGAAAATAA
GGCTAATCTGCCGACCGTCGCCAGCAATGGCAATGGTCTGATCACAGCCA
AAATGGATCTATTGGAGGAGGAGGTCATGCAGTCGATAACTGTGATTGAT
GACGATGACGAGGAGAAAAAGGAAGTCGCTGAAGACGAAGAAGAGAGCAG
CAATAATGCCAAACCCATTGACCTTCACCAGCCAATTGCTGATAATGAGC
ACGAGCTGGACATTGTGATAAACAATGTGGTCTGCTCGTTTAGCGTCGGC
TGTCACCTGAAGCTGCGCGAAATTGCGCTGCAGGGATCAAATGTGGAGTA
CCGTCGCGAGAACGGAATGGTGACAATGAAGCTCCGCCATCCATACACCA
CTGCCTCGATTTGGTCGTCGGGGAGGATTACCTGCACTGGTGCCACTTCC
GAGTCAATGGCCAAAGGTCGCCTGCACGCCGCTATGCCCAGATGCCTTGG
CAAGCTGGGATTTCCCCACTCCGTTTCCTCAACCTTTCGCATTGTCAACG
TACCTGGGCCACCTGCAGCATGCCGTGGCCCATCAAGATCGTCAACTTTT
TCGAGCGCCATCGCGAGAACCGCCAGCTACGAGCCCGAGCTGCATCCTGA
GTGACTTACAGATGCGCGATCCGATCCAAAGCCACCTGAAGATCCCTCCT
CCCCCCGGGCAGCGTTACAGTCACCGCGGCTAGCGTAAACACGGTGGAAT
TCGCTATTCCGGC
UFO09965.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trf2-RJ | 6934 | CG18009-RJ | 4016..5089 | 9..1090 | 4915 | 97.8 | Plus |
| Trf2-RE | 7131 | CG18009-RE | 4213..5286 | 9..1090 | 4915 | 97.8 | Plus |
| Trf2-RF | 9866 | CG18009-RF | 4132..5205 | 9..1090 | 4915 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8427087..8427888 | 9..810 | 4010 | 100 | Plus |
| X | 23542271 | X | 8427957..8428152 | 822..1022 | 525 | 93.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:29:09 has no hits.
UFO09965.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:42 Download gff for
UFO09965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf2-RE | 4208..5298 | 9..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:29 Download gff for
UFO09965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf2-RF | 4132..5222 | 9..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:57 Download gff for
UFO09965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trf2-RF | 4132..5222 | 9..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:57 Download gff for
UFO09965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8427947..8428205 | 810..1076 | 91 | -> | Plus |
| X | 8427087..8427887 | 9..809 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:29 Download gff for
UFO09965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8321120..8321920 | 9..809 | 100 | -> | Plus |
| arm_X | 8321980..8322238 | 810..1076 | 91 | -> | Plus |
