UFO09968.5prime Sequence
1091 bp (981 high quality bases) assembled on 2011-10-17
> UFO09968.5prime
CAGTCGACATGCTGAATCCGACCGAGCCGCAGCCAGTGCCACTATTCCTG
CCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCATCCGCAAGTT
CTCACCCTCGAGGCGCCTGGAGTCGCGAGAACTCGCCAAGCTTCTCGCCC
AGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATAGGAGCACTC
TACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCAACTAGAGAT
CGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGGACGTCCTCA
ACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTGCGCCGAGAT
CCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATTCAAGCAGCT
GGTCGTGGCCAGGATTCTGGCGGGCGGGGTGATCGACAAACAGAGCATGC
TGCACGTTGGCGATGTCATCCTAGAGGTGAACGGTACGCCCGTTCGCACT
CCCGATGAGCTGCAGGTGGAGGTGTCGCGGGCCAAGGAGAATCTCACCCT
CAAGATCGGGCCGAACGTGGACGAGGAGATCAAGAGCGGTCGCTATACTT
GCTACATGCGTGCCCTTTTCACATACAATCCATCCGAAGATTCCTTGCTG
CCATGCAGGGATATTGGATTGCCCTTCAAGTCGGGCGACATTTTGCAGAT
CATCAACGTAAAGGATCCCAACTGGTGGCACGCCAAGAACATTACTGCCG
AATCTGACAAAATTGGACTCATACCATCCCAAGAGCTGGAGGAGCGGCGC
AAAGCCTTCGTGGCCCCCGAGGCGGACTACGTTCACAAGATTGGCATTTG
CGGAACAAGAATCTCGAAGCGAAAGCGCAAGACCATGTACCGATCTGTGC
CAATTGCGAGTTCGACAGCGAGCTGCTGCTCTATGAGAGTCCCGCGATGC
CGCCGTTCCGCAGAAAACCCTGATTCTCATCGTGTTTCCGTGTGGGAAGA
CGTACGCTCAGATCGCTGATCACAGCGATGTGAACAAGTTCGGAGCGTCA
TCCAACATACCAGTTCGCCTAGCCGCCCTGAAGAGAAAACG
UFO09968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vari-RD | 2717 | CG9326-RD | 486..1556 | 9..1064 | 4870 | 97.9 | Plus |
| vari-RE | 2535 | CG9326-RE | 486..1076 | 9..599 | 2940 | 99.8 | Plus |
| vari-RB | 2610 | CG9326-RB | 486..1076 | 9..599 | 2940 | 99.8 | Plus |
| vari-RE | 2535 | CG9326-RE | 1140..1619 | 600..1064 | 1930 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20791230..20791664 | 599..165 | 2175 | 100 | Minus |
| 2L | 23513712 | 2L | 20790391..20790558 | 860..693 | 825 | 99.4 | Minus |
| 2L | 23513712 | 2L | 20792113..20792267 | 165..11 | 760 | 99.4 | Minus |
| 2L | 23513712 | 2L | 20790622..20790720 | 698..600 | 495 | 100 | Minus |
| 2L | 23513712 | 2L | 20790135..20790335 | 1047..861 | 325 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:29:30 has no hits.
UFO09968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:44 Download gff for
UFO09968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vari-RD | 484..1558 | 9..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:42 Download gff for
UFO09968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vari-RD | 486..1560 | 9..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:08 Download gff for
UFO09968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vari-RD | 486..1560 | 9..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:08 Download gff for
UFO09968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20790391..20790552 | 699..860 | 99 | <- | Minus |
| 2L | 20790622..20790720 | 600..698 | 100 | <- | Minus |
| 2L | 20791230..20791664 | 165..599 | 100 | <- | Minus |
| 2L | 20792114..20792274 | 1..164 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:42 Download gff for
UFO09968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20790622..20790720 | 600..698 | 100 | <- | Minus |
| arm_2L | 20790391..20790552 | 699..860 | 99 | <- | Minus |
| arm_2L | 20791230..20791664 | 165..599 | 100 | <- | Minus |
| arm_2L | 20792114..20792274 | 1..164 | 96 | | Minus |
