UFO09969.5prime Sequence
1103 bp (980 high quality bases) assembled on 2011-10-17
> UFO09969.5prime
CAGTCGACATGTTACGCGAGGCTCTTAGGATCGGCAACAGGCGCTGGTAC
AGCTACAAGTCCGTCCGTCGTCCGAATCTGGGCGCCACAGGTACTCCAAA
GATGGAGCCGCCAAAGGAACAGCCGGAGGCGTCCTCCAAAGCGGAGAGCG
GACATGGCAGCCTGGCCAAGCAACTGAGGGCCAAGATTCTGTCCACCGGA
CCCATTCCTGTGGCCGAGTACATGCGCGAAGTGCTGACTAATCCCCAAGC
TGGCTACTATATGAACCGGGATGTGTTCGGCAGAGAGGGCGACTTCATAA
CCTCCCCGGAAATATCACAGATCTTCGGAGAGCTCGTGGGAATTTGGCTG
GTGAGCGAGTGGCGCAAAATGGGCAGTCCCTCGCCCTTTCAACTTGTGGA
GCTCGGTCCGGGTCGCGGCACACTGGCCAGGGACGTGCTGAAGGTGCTCA
CCAAGTTCAAGCAGGACGCCGAATTCTCAATGCACATGGTGGAGGTCAGT
CCGTTTCTGAGCAAGGCACAGGCACAGCGCTTCTGCTACTCCCACCAAAC
CCTGCCGGAGGACGCACAGTTGCCCCATTACCAGGAGGGCACAACGGCCA
GTGGAACGAAGGCATTCTGGCACCGTCGGCTAGAGGATGTGCCCCAGGGA
TTCTCCCTAGTTCTCGCCCACGAGTTCTTCGACGCCCTGCCTGTGCACAA
GCTCCAACTCGTAGATGGCAAGTGGCAGAGGTGCTCATCGATGTGGCATC
CTCTGATGGCGCACAAGAAGCTAGCTTCCGATATGTGCTCTCACGTAGCC
AAACACCCGTTTCGAGTCTTTATCGACCGCTGCCCGGCGAGACACGATCC
TGTTTGGAGCACTCCCTGGAGACGGAACGACAAGTGGGACTGCTCCGCCG
AGCGCATCGAACGGGATGGCGGCATCGCTCTAATCATGGATTATGGCCAT
TTTGCGAAAAACCGAAACTTTTCCGGGCCTTCAAGCAGCACAAGCTGCAC
GATCCGCTGGTGGAGCAGGCAGTGCCTGATCTCACGGCCGATGTTGAACT
TCAGCTAGTGCGTCACATTGCCCGAAAACCGCGAATTGTCACTGCTGCGG
TCC
UFO09969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17726-RA | 1409 | CG17726-RA | 39..1135 | 9..1103 | 5075 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11227179..11227921 | 331..1072 | 3255 | 96.8 | Plus |
| 3R | 32079331 | 3R | 11226800..11227123 | 9..332 | 1620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:29:38 has no hits.
UFO09969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:45 Download gff for
UFO09969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17726-RA | 37..1133 | 9..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:46 Download gff for
UFO09969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17726-RA | 39..1135 | 9..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:12 Download gff for
UFO09969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17726-RA | 39..1135 | 9..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:12 Download gff for
UFO09969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11226800..11227123 | 9..332 | 100 | -> | Plus |
| 3R | 11227181..11227953 | 333..1103 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:46 Download gff for
UFO09969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7052522..7052845 | 9..332 | 100 | -> | Plus |
| arm_3R | 7052903..7053675 | 333..1103 | 97 | | Plus |
