UFO09971.5prime Sequence
1094 bp (976 high quality bases) assembled on 2011-10-17
> UFO09971.5prime
CAGTCGACATGTATGTTCATGCGATTTATGAACATATGTTTAGCCATTTG
GCCGCTTTTGGCCAACTGTGCTTCGTGTTGGCTCCTGGGGAAAGTGCAAC
ATTTGCGACTCCATTAACGGGTACACTCACTAACGCCCTTCGGTTGCATC
TCCCTCACAGGCGCAATGGAGCCTCCAGCACAGCCTCCGAGCCGCTGCGT
CCCAATCTGGATGGCAGCCACCATCTGCAGGAGTACACCTACAAGAAGAT
AACGGCCTGCGACGTCTGCTCCCAGATTCTGAGAGGGCACACACGCCAGG
GATTACGCTGCCGCATCTGCAAGCTGAACGCCCATGGAGATTGCGCCCCC
AATCTGCCGCGCTGCCAGCCAAAGCAGAAGCTGCTCCGGCGACAGAAGAG
CACATCGGAGCTGGAGAATCGTGTTGATATCGAGGAAGAAACGTCAGCGA
ATCCGAAGTCCGAAACAACGCGACCCTTTGGCGAACCACTGATGCTCCTC
AAGAGCACGGAATCCAATCCGGATGAGTCCAAGGGCAATCGACGAGTGCG
CGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA
AGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACC
TTGTCGCCTTGCGTATATATTTGCCCATGTGAAACGGGGCGAGAGTGTCA
TATTGCCACGTTTAATCAAACTGTGAAACCCACCCAGGATTGCCTGAAAC
GAAAACATATTCTCATAAACCTTAGAAATAGCAGGTTTCACCGTAACCGC
CCAATCTGGCAATGGTGTCTAAGAACCTGGCGGAATCGTCTGAT
UFO09971.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43729-RN | 4584 | CG43729-RN | 3753..4145 | 159..551 | 1965 | 100 | Plus |
| CG43729-RM | 2382 | CG43729-RM | 1551..1943 | 159..551 | 1965 | 100 | Plus |
| CG43729-RC | 1842 | CG43729-RC | 1011..1403 | 159..551 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:28:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15456283..15456560 | 9..286 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 15456658..15456815 | 284..441 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 15463298..15463407 | 442..551 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:28:19 has no hits.
UFO09971.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:38 Download gff for
UFO09971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34365-RE | 13..555 | 9..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:22:58 Download gff for
UFO09971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43729-RB | 5355..5747 | 159..551 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:07:36 Download gff for
UFO09971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43729-RC | 1011..1403 | 159..551 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:07:36 Download gff for
UFO09971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15456283..15456559 | 9..285 | 100 | -> | Plus |
| 2R | 15456660..15456815 | 286..441 | 100 | -> | Plus |
| 2R | 15463298..15463407 | 442..551 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:22:58 Download gff for
UFO09971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11343788..11344064 | 9..285 | 100 | -> | Plus |
| arm_2R | 11344165..11344320 | 286..441 | 100 | -> | Plus |
| arm_2R | 11350803..11350912 | 442..551 | 100 | == | Plus |
