UFO09973.5prime Sequence
1112 bp (975 high quality bases) assembled on 2011-10-17
> UFO09973.5prime
CAGTCGACATGTCCAAAATATTCACGCCCACAAATCAAATACGCCTCACA
AATGTCGCCATTGTGAGGCTAAAAAAAGGTGGCAAGCGATTTGAGATCGC
CTGCTATAAAAATAAGGTTCTTTCGTGGAGGAGCAACAGCGAAAAGGACA
TCGATGAGGTCCTGCAAACCCATACCGTGTTCACCAATGTCTCCAAAGGA
CAGGCGGCCAAAAAGGACGAGCTGCAAAAGGCCTTCAATAAAACAGACGA
GACTGAGATTTGCAAGGAGATCCTCAGCAAAGGAGAACTGCAGGTGTCGG
AAAAGGAGCGCCAAAGTTGTCTGGACACGCAACTAAATAGTATAGTTAAT
TCCGTGGCTGCGTTGTGTGTAAATCCAGAGACGCGTCGTCCATATCCCGC
CTCCATCATCGAGAAATCCCTGAAGGATGCCCACTTCTCCGTTAAGATGA
ACAGGAACACCAAGCAGAACACACTGGAGGCCATCAAGATTCTCAAGGAC
CATATGCCCATCGAGAGGTCGCGCATGAAGCTGCGCGTTAGCTTTGCTGG
AAAGGAGGGCGGTGGCAAGCTCAAGGAATCGGTGGTCAAGTTGGCCAACG
CAGTGGAGCACGAGGAATGGGACGAGGCCACCTTGCACTTAACCTTGCTC
ATAGATCCTGGCCAATATCGTGTCATTGATGAGCTGGTAAGGAACGAAAC
GAAGGGTAAGGGACTGCTGGAGCTGCTCGAGCTGAAGAAGTGGTGGAGAG
CGAGGAACTCTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGATTCTTCACCAAATAAAA
ACGCCCCGGCGGCAACCGAGCGTTCTGAACAAATTCCAGATGGGAGTTCT
GAGGTCATTACTGGATCCTATTCAACAGGAGTCCCAAGCGAGCTCGAATA
TCAAATTACCGCCCCCGCCCTGCCCACTCATTCGCAGTACTGTTGTAATT
TCATTAAGCATTCCTGCGAAATGAAAGCCCATCCCACACGGCAATGATGA
CCTTGATCGCCA
UFO09973.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8549-RB | 882 | CG8549-RB | 40..795 | 9..763 | 3755 | 99.9 | Plus |
| CG8549-RA | 1037 | CG8549-RA | 195..950 | 9..763 | 3755 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6753316..6753942 | 138..763 | 3085 | 99.8 | Plus |
| 3L | 28110227 | 3L | 6753107..6753237 | 9..139 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:29:50 has no hits.
UFO09973.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:46 Download gff for
UFO09973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8549-RA | 190..955 | 1..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:53 Download gff for
UFO09973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8549-RA | 190..955 | 1..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:18 Download gff for
UFO09973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8549-RA | 190..955 | 1..769 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:18 Download gff for
UFO09973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6753102..6753237 | 1..139 | 97 | -> | Plus |
| 3L | 6753318..6753947 | 140..769 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:53 Download gff for
UFO09973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6746202..6746337 | 1..139 | 97 | -> | Plus |
| arm_3L | 6746418..6747047 | 140..769 | 99 | == | Plus |
