UFO09977.5prime Sequence
1091 bp (981 high quality bases) assembled on 2011-10-17
> UFO09977.5prime
CAGTCGACATGGATCCTGCAACAAACTGTCGATATTCACTAGCCTATGGC
GCCCTCTTTATTTTGCTGCTCCAACTGTGTTTTGAATCCGTGGAATGCCT
GACAATGACCGAAATCAAAATCCCCAAGCACATTATGCGCCACGAGGATG
CCGTGCTCGGGTGCAAGTTCGATCTGGACGGGGAGTCACTGTACTCGGTC
AAGTGGTACAAGGATGGCTTTGAGTTCTACCGCTATGTGCCCAGGGACAT
GCCGCCGGGCCAGGTTTTTCCGCTGCCAGGAGTGGACGTTGAGTTACAAA
ACTCGACGGACGTGGTCGTTGTTCTGCGCTCAGTTAGCCTTCAGTCAACT
GGCCGATATCGCTGCGAGGTGTCCGGCGAGGCGCCTTCGTTTCAGACGGT
TTCCGGTCACGAGGACATGATTGTTGTGGTGACCCCGAAGCATGGACCAC
AAATCACTGGCGGACAGCCGCGGTACCAAATTGGCGACATGGTCCGCGTC
AATTGCACCTCGGCGGCATCAAGGCCGGTCTGCCATCTCAGCTGGCTGAT
TAACGGGATGCACGCGAACCGTTCGCTGCTGCGACCTTATGAACCACTGA
TTGTGGGTCGCGAGGGTCTGGAGGTCGCCCGATTGGGCCTGGAGTTCCGG
GTGAGAGGAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATT
ACTGGATCTATCACAGGAGTCCAAGCGAGCTCGATATCAATTACGCCCCG
CCCTGCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTTGCGACA
TGAGCATCACAAACGGCATGATGACTGATCGCAGCGGCATCAGCACCTTG
TCGCCTTGCGTAAAATATTTGCCCATGGTGAAAACGGGGGCGAAGAGTGT
CATTGCCAGGTATCACTGCAACTCAGATGCTGAACAACATT
UFO09977.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIIb-RD | 3249 | CG33179-RD | 1092..1743 | 8..659 | 3245 | 99.8 | Plus |
| beat-IIIb-RC | 3249 | CG33179-RC | 1092..1743 | 8..659 | 3245 | 99.8 | Plus |
| beat-IIIa-RE | 4457 | CG12621-RE | 950..1408 | 99..557 | 375 | 72.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16990240..16990470 | 429..659 | 1155 | 100 | Plus |
| 2L | 23513712 | 2L | 16984609..16984818 | 84..293 | 1050 | 100 | Plus |
| 2L | 23513712 | 2L | 16986013..16986150 | 292..429 | 675 | 99.3 | Plus |
| 2L | 23513712 | 2L | 16976974..16977050 | 8..84 | 385 | 100 | Plus |
| 2L | 23513712 | 2L | 17196912..17196998 | 256..170 | 240 | 85.1 | Minus |
| 2L | 23513712 | 2L | 17169813..17169941 | 429..557 | 210 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:29:57 has no hits.
UFO09977.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:46 Download gff for
UFO09977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIb-RC | 1084..1743 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:23:58 Download gff for
UFO09977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIb-RC | 1084..1743 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:21 Download gff for
UFO09977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIIb-RC | 1084..1743 | 1..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:21 Download gff for
UFO09977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16990241..16990470 | 430..659 | 100 | == | Plus |
| 2L | 16976966..16977050 | 1..84 | 95 | -> | Plus |
| 2L | 16984610..16984818 | 85..293 | 100 | -> | Plus |
| 2L | 16986015..16986150 | 294..429 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:23:58 Download gff for
UFO09977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16986015..16986150 | 294..429 | 99 | -> | Plus |
| arm_2L | 16976966..16977050 | 1..84 | 95 | -> | Plus |
| arm_2L | 16984610..16984818 | 85..293 | 100 | -> | Plus |
| arm_2L | 16990241..16990470 | 430..659 | 100 | == | Plus |
