UFO09979.5prime Sequence
1121 bp (945 high quality bases) assembled on 2011-10-17
> UFO09979.5prime
CAGTCGACATGCCAATGGTGCCGCCACGGCTGCTGCTGCGTCTGCGGCGG
CCCCTGCACCTGATGGAACTGCGCATCCTGCTGCTCTGCCTGCCGACGCT
GCTCCTGGCCACCACCCTCGAACCAGATCAAAAGTCAATACTCACAGATA
ACGATTGGAAGAAGCTATGGATGCGCGGCGGTATAAATGGCGACTCAAAA
TTGGATAATAATCTCGACTCGAGCGACAGTCCAATGTTTGAAGACAGCGA
GCTGATGGCGCACAACACCACAGTCCAGCTGGGTGGGACCGCCTTTCTGG
TCTGCAAGGTCTCCGGTGTGGACAGAGTGGGTGTAAATTGGAACCAAATA
TCTTGGATCCGCCGCCGGGACTGGCACATCCTGTCGTCGGGGGCCCAGCT
CTACACCAACGACGAGCGTTTCGCCATACTGCACACGCCCGGCTCCAACA
TGTGGACGCTGCAGATAAAGTTTGTGCAGCGCCGGGATCACGGCATGTAC
GAGTGCCAGGTCTCGACACCGACTGGCATCATTTCCCACTTTGTGAATCT
TCAAGTGGTTGTTCCAGAGGCATTCATTCTGGGCTCCGGCGAGCTGCATG
TCGACATGGGCTCAACAATCAATTTAGTTTGCATTATTGAGAAGAGTCCT
ACACCACCGCAGTACGTATACTGGCAAAAGAACGATCGCCTGATCAACTA
CGTCGACTCCCGGCGCGACATAACCATTGAGACGACCCCGGGACCCCGCA
CTCAGAGCCGCCTGATCATCCCGGGACCGCAGGTCACGGACTCCGGCAAC
TACACCTGCTCGGCCAGCAACACGGAGCCGGGCGAGCATATACGTTCTTC
GTTTCGAAAGGGCGACAATATGGCGGCAATCTCGCGGCGGAAGACCTCCT
CGGCCCGATCGGCCTGACGCACATATTTTAAGTCGATGCTGGCGCCTGTC
TCCTGCTGAACACGGGTTGTTGTGAGACATATCTTCCTGACCGCAGGCTT
TCTAGAACAATCGTTTGGCCGCGCGGGCCCCGGTAAGTGGTCATATTCAT
AATCATAATCATAATCCATAATCCACACTTAGCCTAGAGATTCTTGGCAT
TGACTAACGGCTGCAATTCTC
UFO09979.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr12-RC | 4062 | CG34385-RC | 1535..2512 | 9..992 | 4680 | 98.9 | Plus |
| dpr12-RD | 4016 | CG34385-RD | 1504..2466 | 9..992 | 4445 | 97.4 | Plus |
| dpr12-RE | 4583 | CG34385-RE | 1746..2391 | 341..992 | 3020 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5857366..5857582 | 643..861 | 965 | 98.2 | Plus |
| 2R | 25286936 | 2R | 5855514..5855684 | 341..511 | 855 | 100 | Plus |
| 2R | 25286936 | 2R | 5857168..5857305 | 507..644 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 5852943..5853070 | 124..251 | 640 | 100 | Plus |
| 2R | 25286936 | 2R | 5847353..5847470 | 9..126 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 5853710..5853801 | 250..341 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 5858446..5858558 | 861..976 | 320 | 94.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:30:09 has no hits.
UFO09979.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:48 Download gff for
UFO09979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr12-RC | 658..1646 | 2..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:05 Download gff for
UFO09979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr12-RC | 1528..2516 | 2..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:27 Download gff for
UFO09979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr12-RC | 1528..2516 | 2..996 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:27 Download gff for
UFO09979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5852946..5853070 | 127..251 | 100 | -> | Plus |
| 2R | 5853712..5853801 | 252..341 | 100 | -> | Plus |
| 2R | 5857171..5857305 | 510..644 | 100 | -> | Plus |
| 2R | 5855515..5855682 | 342..509 | 100 | -> | Plus |
| 2R | 5857368..5857581 | 645..861 | 97 | -> | Plus |
| 2R | 5858447..5858558 | 862..976 | 94 | -> | Plus |
| 2R | 5858624..5858639 | 977..992 | 100 | == | Plus |
| 2R | 5847346..5847470 | 2..126 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:05 Download gff for
UFO09979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1734851..1734975 | 2..126 | 96 | -> | Plus |
| arm_2R | 1740451..1740575 | 127..251 | 100 | -> | Plus |
| arm_2R | 1741217..1741306 | 252..341 | 100 | -> | Plus |
| arm_2R | 1743020..1743187 | 342..509 | 100 | -> | Plus |
| arm_2R | 1744676..1744810 | 510..644 | 100 | -> | Plus |
| arm_2R | 1744873..1745086 | 645..861 | 97 | -> | Plus |
| arm_2R | 1745952..1746063 | 862..976 | 94 | -> | Plus |
| arm_2R | 1746129..1746144 | 977..992 | 100 | == | Plus |
