UFO09981.5prime Sequence
1101 bp (977 high quality bases) assembled on 2011-10-17
> UFO09981.5prime
CAGTCGACATGTATCACCTGAAGATCAACCCTAAGGAGTACTCCGAGCAC
GAGCTGGAGAAGATCACCCGTCGCTTCACCCTTGAGTTGGCCAAGAAGGG
CTTCATTGGACCCGGTGTCGATGTGCCCGCCCCCGACATGGGAACCGGTG
AGCGCGAGATGTCCTGGATTGCCGATACTTATGCCAAGACCATCGGTCAC
CTGGACATCAATGCTCATGCCTGTGTCACCGGCAAGCCCATCAACCAGGG
CGGTATCCACGGACGCGTCTCGGCCACCGGTCGCGGTGTCTTCCACGGCC
TGGAGAACTTCATCAACGAGGCCAACTACATGAGCCAGATCGGCACCACT
CCCGGCTGGGGCGGCAAGACCTTCATCGTCCAGGGCTTCGGTAACGTGGG
CCTGCACACCACTCGCTATCTGACCCGCGCCGGAGCCACCTGCATCGGTG
TCATTGAGCACGACGGCACTCTGTACAACCCGGAGGGCATTGACCCTAAG
CTGCTGGAGGACTACAAGAACGAGCACGGCACCATTGTGGGCTACCAGAA
CGCCAAGCCCTACGAGGGCGAGAACCTCATGTTCGAGAAGTGCGACATCT
TCATTCCCGCTGCCGTCGAGAAGGTCATCACCAGCGAGAATGCCAACCGC
ATTCAAGCTAAGATCATTGCCGAGGCTGCCAACGGCCCCACCACCCCCGC
TGCCGACAAGATCCTCATCGATCGCAACATCCTGGTCATTCCCGATCTGT
ACATCAACGCCGGTGGTGTCACCGTCTCCTTCTTCGAGTGGCTGAAGAAC
CTGAACCACGTCTCGTACGGTCGCCTGACCTTCAAGTATGAGCGCGAGTC
CAACCTACCATCTGCTTGAATCCGTTCAAGAGTCCCTGGAGCGTCGCTTC
GGCCGTGTGGGCGGTCGCATCCCCGTGACCCCCTCGAGTCGTTCCAGAAG
CGCATCTCCGGCGCCCTCCGAGAAGGATATCGTGCACTTCGGCCTGACTA
CACAATGGAGCGCTCCGCCCCGCGCCATCATGGAAGACGCCATGAAGTAC
AAACCTGGCCTGGAACCTCAAACGCTGCCTACGTCAACTCCAATGGAGAA
G
UFO09981.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gdh-RD | 1796 | CG5320-RD | 259..1341 | 18..1101 | 5080 | 98.5 | Plus |
| Gdh-RF | 2156 | CG5320-RF | 619..1701 | 18..1101 | 5080 | 98.5 | Plus |
| Gdh-RB | 1835 | CG5320-RB | 259..1124 | 18..884 | 4235 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23938120..23938445 | 343..18 | 1630 | 100 | Minus |
| 3R | 32079331 | 3R | 23937732..23938052 | 662..342 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 23937423..23937629 | 868..661 | 990 | 99.5 | Minus |
| 3R | 32079331 | 3R | 23936421..23936646 | 1092..868 | 680 | 91.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:30:17 has no hits.
UFO09981.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:48 Download gff for
UFO09981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdh-RF | 626..1702 | 24..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:11 Download gff for
UFO09981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdh-RF | 625..1701 | 24..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:30 Download gff for
UFO09981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gdh-RF | 625..1701 | 24..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:30 Download gff for
UFO09981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23936413..23936645 | 869..1101 | 93 | <- | Minus |
| 3R | 23937423..23937627 | 663..868 | 99 | <- | Minus |
| 3R | 23937732..23938051 | 343..662 | 100 | <- | Minus |
| 3R | 23938121..23938445 | 18..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:11 Download gff for
UFO09981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19762135..19762367 | 869..1101 | 93 | <- | Minus |
| arm_3R | 19763145..19763349 | 663..868 | 99 | <- | Minus |
| arm_3R | 19763454..19763773 | 343..662 | 100 | <- | Minus |
| arm_3R | 19763843..19764167 | 18..342 | 100 | | Minus |
