UFO09988.5prime Sequence
1105 bp (1000 high quality bases) assembled on 2011-10-17
> UFO09988.5prime
CAGTCGACATGGCGATTGTGTCGTCGGCCCGTGAGTCGCTCTCCCATGCG
ATGAACAACCGCTTCTTGCCCAACCTGGAGTACTTGCTGCAGGGATCTAT
CCTGGATTCCGCCGTGGAACACTTGATGCACAGACTAAAGGGACTCTGCG
ACAATGTGGACACCTCGCCGGAGCCGTTTCACGATCTGGAAGTGTGTATG
AGCCTTCGCCAGCCCAATGCCAACCAGCCGCTGCTTCTTCGCGTGCGCCG
AGCCCTTGGTCGCGATGCACCCTTTCAGATGCGCTACCTAGGAAACCCCG
AGGTGGATCTGCGCCGGCCTACATTGGTACGCAGCTGCATGGACTGCGCC
TGCACCAATGGCATTTTGGAATTCCTCACGGAAATGGGCTTCCGCCTGGA
GTTCGAGTACATAGCAAAGGGCTATATGTTCCGCAAGGGGCGCATGAAGA
TTACCGTCTCCAAGCTCATTAAGATTGTGCCCGGCAAGCAGCAGGACATG
GCCAACGAGCCAATCTCACAAAGCTACATAGTGGAACTCTCTGTGGTGGC
GCCAACGGGGCAGGAGAATGTCGGCGAGGAAATGCGCGTGTTTGCCGAGC
AACTAAAGCCACTCGTGCAGCTCGAGAAGATCGACTACAAGCGACTGGGC
GGCATGCCGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
TGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCACTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGCCGA
CATGAAGCCATCACAAACGGCATGATGACTGAATCGCAGCGCATCAGCAC
CTTGTCGCCTGCGTATAAATATTTGCCATGGTGAACGGGGGGCGAGAAGT
TGTCCTTATTTGCACGGTATCGACTGTGACTCACCAGGATGCTGAACTAA
ACATA
UFO09988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED18-RA | 842 | CG14802-RA | 106..756 | 9..659 | 3255 | 100 | Plus |
| MED18-RC | 865 | CG14802-RC | 106..779 | 9..659 | 3015 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1866206..1866496 | 131..421 | 1455 | 100 | Plus |
| X | 23542271 | X | 1866562..1866801 | 420..659 | 1200 | 100 | Plus |
| X | 23542271 | X | 1866014..1866138 | 9..133 | 625 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 2351..2412 | 240..179 | 112 | 64.5 | Minus |
UFO09988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:52 Download gff for
UFO09988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED18-RA | 100..762 | 1..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:34 Download gff for
UFO09988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED18-RA | 100..762 | 1..668 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:48 Download gff for
UFO09988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED18-RA | 100..762 | 1..668 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:48 Download gff for
UFO09988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1866008..1866138 | 1..133 | 96 | -> | Plus |
| X | 1866209..1866495 | 134..420 | 100 | -> | Plus |
| X | 1866563..1866807 | 421..668 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:34 Download gff for
UFO09988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1760041..1760171 | 1..133 | 96 | -> | Plus |
| arm_X | 1760242..1760528 | 134..420 | 100 | -> | Plus |
| arm_X | 1760596..1760840 | 421..668 | 98 | == | Plus |
