UFO09990.5prime Sequence
1114 bp (993 high quality bases) assembled on 2011-10-17
> UFO09990.5prime
CAGTCGACATGCTGCTGATATCACTTACGCTGATGGCTTTTGGCCTGGCC
CAAACGCTGCCCATCGAGGAGGCCGAAACGCCGACGACCAGCGAAATGCC
GGATTCAGGGCGAGTGGTTTTCGATCAGCGACAGACTGGCAGATTCAACA
TCCACGTTAGCATCAAGGATGTGGCCATCATCGAGGTGGGCCAGAATGGA
CTGGCCGAGGAGACGTATAACGATGAGGAGGATTACTACTATGATGACAG
TGCGTTGACCGTCAAACCGATCAAGCTAACTACAGGGACCAGTAGCACCA
CAACAACGAGCACCACATCGGCCACCCTGCCAGAGAGCACTGTATCTACA
GTGGCTCCTACTACCGAAGCCACGCAGCTGAATACAAGCTTAAATCTGTT
GGCTGACATTGCGGCCAGTGGTATAACGAAGCCCAAGTCCAGACTAAACA
ATCTGATGATTGTAGAGACGCCAATCGGCGGTCTAACGAAGCCCTTGCAC
CACCCACTTCATGCTCGATCCAAGGATATACCCAGTATGGCTGCAGCGGC
ACCAACTGCTTTAATTACGCCACCCACTTTGCGCGAGAACATTGAGTACA
CGCCGCCCAAAGGTCACAACTCGCCCATTTTCAAGGTGAAAGTTCAACGA
TCTTCGGTGCCGGCTACCAAGAAACCCGCTCGCTGCCGAAATCATCAGGT
GCGAGATGCCCAGGGCAAGTGCACCGACTCGATCTACAGAAAGCTGTACA
GCATGCTGATGGGGATGAATTTTCCTTTTTTGGCAGCCGCAAATGCCGCA
GAAAGTGCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTTCTCACCAATAAAAAACG
CCCGGCGGCCAACCGAGCGGTTCTGAACAAATTCAGATGGGAGTTCTGAG
GTCATTACTTGGATTTTATCAACAGGAGTCCAGCGAGCTTCGATATCAAA
TTACCGCCCCGCCCTTGCCCACTCACTCGCAGATACTTGTTTGTAATTTC
ATTAAGCATTTCTG
UFO09990.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15905-RB | 987 | CG15905-RB | 78..878 | 9..809 | 4005 | 100 | Plus |
| CG15905-RC | 984 | CG15905-RC | 78..875 | 9..809 | 3950 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19646753..19647281 | 736..208 | 2645 | 100 | Minus |
| 2R | 25286936 | 2R | 19647367..19647568 | 210..9 | 1010 | 100 | Minus |
| 2R | 25286936 | 2R | 19646592..19646664 | 809..737 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:31:22 has no hits.
UFO09990.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:53 Download gff for
UFO09990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15905-RB | 78..887 | 9..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:43 Download gff for
UFO09990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15905-RB | 78..887 | 9..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:56 Download gff for
UFO09990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15905-RB | 78..887 | 9..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:56 Download gff for
UFO09990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19646583..19646664 | 737..817 | 95 | <- | Minus |
| 2R | 19646753..19647279 | 210..736 | 100 | <- | Minus |
| 2R | 19647368..19647568 | 9..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:43 Download gff for
UFO09990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15534088..15534169 | 737..817 | 95 | <- | Minus |
| arm_2R | 15534258..15534784 | 210..736 | 100 | <- | Minus |
| arm_2R | 15534873..15535073 | 9..209 | 100 | | Minus |
