UFO09992.5prime Sequence
1120 bp (973 high quality bases) assembled on 2011-10-17
> UFO09992.5prime
CAGTCGACATGATGTCCTGCCCCATTCCCATGCCAATGCCAATTTCTTCA
TTACACAAATCAGAATTTGAACCGGTTAATATTGGAGTTAAGCGCGGAAG
CGACGAACTTTTGAGTCAAGCAGCGGTCATGGCGCCCGCTTCCGACAATA
ACAATCAGGACCTGGCCACAAAGAAGGCCAAACTGGAGCCGGGCACTGTG
CTGGCCGGCGGAATTGCCAAGGCCTCAAAAGTCATCCACTTGCGCAACAT
TCCGAACGAGTCCGGCGAGGCAGATGTGATTGCCCTGGGCATTCCGTTTG
GACGTGTGACCAACGTGCTGGTGCTCAAGGGCAAGAACCAGGCTTTCATC
GAGATGGCCGACGAGATCTCCGCAACGTCAATGGTGTCCTGTTACACAGT
AACTCCGCCCCAGATGCGCGGCCGCATGGTCTACGTGCAGTTTTCTAATC
ATCGCGAACTAAAGACGGACCAAGGTCACAACAACTCGACCGCCCATAGC
GACTACAGCGTCCAGTCCCCGGCGAGCGGATCGCCTCTGCCCCTTAGCGC
CGCTGCCAACGCGACCAGCAACAATGCAAACAGCTCAAGCGACAGCAACA
GCGCCATGGGAATCTTACAAAACACAAGCGCCGTCAATGCGGGCGGCAAC
ACCAACGCTGCCGGGGGACCCAATACTGTGCTCCGTGTGATTGTCGAGTC
CTTGATGTACCCCGTCTCGCTGGACATACTGCACCAGATCTTCCAGCGCT
ACGGCAAGGTGCTGAAGATTGTCACCTTCACAAAGAACAATTTCATTCCA
GGCCCTCATCCAATATCCCGGACGCCAATTCCGCCCCAGCACGCCAAGTC
GCTCCTGGACGGCAGAATATATACAACGGTTGCTGCACGTTGCGTTATTG
ATACAGCAAGCTGACGGCTCTGAATTGTAAAGTACACAACGACAAATCGC
GCGACTTCACTAACCCCGCTCTGCCACTGTGAACCCGGGAGTGATATCAT
GCCCACGCGGCGACTGATGACACATGATTGGCTTTGATCGCCGCCGGTCA
GCGACTCCCCCCAAGTGAATAAATAGTCACGGCCTGGGGCCCTGGATCTG
CGCATTGCTGGACTTGCACT
UFO09992.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| heph-RV | 3128 | CG31000-RV | 930..2021 | 8..1088 | 4815 | 97.2 | Plus |
| heph-RP | 2592 | CG31000-RP | 394..1485 | 8..1088 | 4815 | 97.2 | Plus |
| heph-RN | 7366 | CG31000-RN | 671..1762 | 8..1088 | 4815 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31866127..31866436 | 792..483 | 1550 | 100 | Minus |
| 3R | 32079331 | 3R | 31873834..31874100 | 482..216 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 31881748..31881873 | 216..91 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 31865862..31866038 | 977..800 | 550 | 91.1 | Minus |
| 3R | 32079331 | 3R | 31959035..31959119 | 92..8 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:31:30 has no hits.
UFO09992.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:54 Download gff for
UFO09992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RM | 1179..1269 | 1..91 | 96 | -> | Plus |
| heph-RM | 1308..2277 | 92..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:48 Download gff for
UFO09992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RN | 664..1725 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:59 Download gff for
UFO09992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heph-RN | 664..1725 | 1..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:59 Download gff for
UFO09992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31881748..31881871 | 93..216 | 100 | <- | Minus |
| 3R | 31959035..31959125 | 1..92 | 96 | | Minus |
| 3R | 31865775..31866036 | 802..1055 | 92 | <- | Minus |
| 3R | 31866119..31866436 | 483..801 | 99 | <- | Minus |
| 3R | 31873834..31874099 | 217..482 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:48 Download gff for
UFO09992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27691497..27691758 | 802..1055 | 92 | <- | Minus |
| arm_3R | 27691841..27692158 | 483..801 | 99 | <- | Minus |
| arm_3R | 27699556..27699821 | 217..482 | 100 | <- | Minus |
| arm_3R | 27707470..27707593 | 93..216 | 100 | <- | Minus |
| arm_3R | 27784757..27784847 | 1..92 | 96 | | Minus |
