UFO09993.5prime Sequence
1121 bp (982 high quality bases) assembled on 2011-10-17
> UFO09993.5prime
CAGTCGACATGCGTGAATGTATCTCTATCCATGTTGGTCAGGCTGGTGTC
CAGATTGGAAACGCCTGCTGGGAGCTCTACTGCTTGGAGCACGGCATCCA
GCCCGATGGCCAGATGCCGTCTGACAAGACCGTGGGCGGAGGTGATGACT
CGTTCAACACCTTCTTCAGCGAGACTGGAGCTGGCAAGCACGTGCCCCGC
GCCGTGTTTGTGGATCTGGAACCCACTGTGGTCGATGAGGTCCGTACCGG
AACCTACCGTCAGCTGTTCCACCCTGAGCAGCTGATCACTGGTAAGGAGG
ATGCGGCCAACAACTACGCCCGTGGCCACTACACCATCGGCAAGGAGATC
GTCGATCTGGTTCTGGACAGGATCCGCAAGCTGGCCGATCAGTGCACCGG
TCTGCAGGGCTTCCTCATCTTCCACTCGTTCGGTGGAGGTACCGGCTCCG
GCTTCACCTCGCTGCTGATGGAGCGTCTCTCCGTGGACTACGGCAAGAAG
TCCAAGCTGGAGTTCGCCATCTACCCAGCCCCCCAGGTGTCCACTGCCGT
GGTCGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCATT
CCGACTGCGCCTTCATGGTCGACAACGAGGCTATCTACGACATCTGCCGC
CGCAACCTGGACATTGAGCGCCCCACGTACACCAACCTGAACCGTCTGAT
TGGCCAGATCGTGTCCTCGATTACCGCCTCTCTGCGATTCGATGGTGCCC
TTAACGTGGATCTGACTGAGTTCCAGACCAACTTGGTGCCCTACCCACGT
ATTCACTTCCCTCTGGTGACCTACGCCCCCGTTATTCTCCGCCGAGAAGG
CCTACCACGAGCAGCTGTCGGTGGCTGAGATCACCAACGCCTGCTTCGAG
CCCGGCCATCAGATGGTCAGTGCGATCCCCGTCCACGGCAAGTACCATGG
CCTGCTGCATGCTGTACCGCGGTGATGGTTGTGCCTAAGGACGTTCACGC
CGCTTTTTGCCACCATCCAGACCAAGCGCAACATTTCATTTCGTCGACTG
GGTGCCCCACTGCCTTCAAAGGTTGGCTCCAACTACAGCCACCAACCGTG
GTGCCTGGAAGGTGAATTTTG
UFO09993.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84B-RA | 1752 | CG1913-RA | 144..1243 | 9..1115 | 5015 | 97.6 | Plus |
| alphaTub84D-RA | 1980 | CG2512-RA | 507..1585 | 9..1093 | 3755 | 90.3 | Plus |
| alphaTub85E-RA | 1560 | CG9476-RA | 128..1196 | 34..1108 | 2885 | 85.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7087233..7088325 | 11..1109 | 4750 | 97.5 | Plus |
| 3R | 32079331 | 3R | 7531259..7532313 | 9..1069 | 3520 | 90.1 | Plus |
| 3R | 32079331 | 3R | 9732286..9732781 | 529..34 | 1565 | 87.7 | Minus |
| 3R | 32079331 | 3R | 9731662..9732152 | 1029..535 | 1100 | 84.3 | Minus |
| 3L | 28110227 | 3L | 9682200..9682753 | 276..829 | 550 | 73.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:31:38 has no hits.
UFO09993.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:55 Download gff for
UFO09993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84B-RA | 197..1308 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:52 Download gff for
UFO09993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84B-RA | 136..1247 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:04 Download gff for
UFO09993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84B-RA | 136..1247 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:04 Download gff for
UFO09993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7087225..7088326 | 1..1111 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:52 Download gff for
UFO09993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2912947..2914048 | 1..1111 | 97 | -> | Plus |
