UFO09994.5prime Sequence
1109 bp (968 high quality bases) assembled on 2011-10-17
> UFO09994.5prime
CAGTCGACATGAGTTCCAAGTCCCTTTTCGACAGCGAGGAGGATGCCGCT
CAGGCCAACAAATTATCCAGGAAAGCAAAGGAATCGCCCTTCATGCTTGT
GGGTATTACCGGATTCGTGGCCGCCGGATTGATTGGAGCGTACAAGTACC
GGAACCGCGGAACGATGAGCACCAGCGTCTTCCTGATGCAGCTGCGAGTC
GCCGCCCAGGGAACCGTCGTCGGATGTCTGACCCTCGGACTGGCCTACAG
CATGGCCAAGGAGTACCTGTTCGACAAGGCGCCCAAGGAAAAGGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCC
TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCA
TATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCT
GAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTT
TCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAA
ATCGTCGTGGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCCAT
GGAAAACCGGTGTAACAAGGTGAACACTATCCCAATATCACAGCTCACCG
TCTTTCATGCCATACGAAATCCGGATGAGCATCATCAGCGGGCAGAATGT
TGAATAAAGCCGATAAACTGTGCTATTTTCTTAACGGTCTTTAAAAGCGT
AAAATCAGCTGACGGTCTGTAAAGTTACATGACCACTGACCTGAAATGCT
CAAGTTCTA
UFO09994.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-RB | 1024 | CG17734-RB | 125..409 | 9..293 | 1425 | 100 | Plus |
| CG17734-RA | 764 | CG17734-RA | 125..408 | 9..292 | 1420 | 100 | Plus |
| CG17734-RC | 1317 | CG17734-RC | 511..702 | 102..293 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11242823..11243014 | 293..102 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 10420733..10421003 | 279..9 | 695 | 83.8 | Minus |
| 3R | 32079331 | 3R | 11243780..11243875 | 104..9 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:30:25 has no hits.
UFO09994.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:49 Download gff for
UFO09994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RB | 97..391 | 1..297 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:15 Download gff for
UFO09994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RB | 118..412 | 1..297 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:34 Download gff for
UFO09994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RB | 118..412 | 1..297 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:34 Download gff for
UFO09994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11242823..11243013 | 103..293 | 100 | <- | Minus |
| 3R | 11243782..11243882 | 1..102 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:15 Download gff for
UFO09994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7068545..7068735 | 103..293 | 100 | <- | Minus |
| arm_3R | 7069504..7069604 | 1..102 | 96 | | Minus |
