UFO09995.5prime Sequence
1025 bp (925 high quality bases) assembled on 2011-10-17
> UFO09995.5prime
CAGTCGACATGGTAAAGTCTTCAAATCCCCTGAGCATCGTGCGCAGCATT
TACAACAACGAATTTCAATGGATGCTGGTCAAGAGCTACGGACTTTTCTT
CTTGGGAGTGCGTTTGGCCAAGGAGTTCGTGGGTGTCGAACTGATGCCGT
CGCTGGGGCCAGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGGGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTC
AAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACTC
TTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAAT
ATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGATG
AAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTA
TCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAATTCCAGATGA
GCATTCATCAGGCGGGCAAGAATGTGAATAAAGGCCGGATAAACCTTGTG
CTTATTTTTCTTTACGGTCTTTAAAAAGCCCGTAATATCCAGCTGACCGT
CTGTTATAGTACATGAGCAACTGACTGAAATGCTCAATGTTCTTACCATG
CAATGGCATTATCAACGTGGCTATC
UFO09995.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34200-RA | 321 | CG34200-RA | 103..258 | 9..164 | 765 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5757910..5758004 | 70..164 | 475 | 100 | Plus |
| 2R | 25286936 | 2R | 5757764..5757826 | 9..71 | 300 | 98.4 | Plus |
Blast to na_te.dros performed 2014-11-27 00:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..299 | 730..799 | 124 | 67.6 | Plus |
UFO09995.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:50 Download gff for
UFO09995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34200-RA | 63..231 | 1..169 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:21 Download gff for
UFO09995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34200-RA | 94..262 | 1..169 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:38 Download gff for
UFO09995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34200-RA | 94..262 | 1..169 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:38 Download gff for
UFO09995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5757755..5757825 | 1..70 | 92 | -> | Plus |
| 2R | 5757911..5758004 | 71..164 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:21 Download gff for
UFO09995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1645260..1645330 | 1..70 | 92 | -> | Plus |
| arm_2R | 1645416..1645509 | 71..164 | 100 | == | Plus |
