UFO09996.5prime Sequence
1093 bp (974 high quality bases) assembled on 2011-10-17
> UFO09996.5prime
CAGTCGACATGCAGATCGTTGCTCTCACCCTCGTTGCGTTTGTGGCCATT
GCCGGTGCCTCCTGCCCGTATGCAGCTCCAGCTCCAGCTTATTCAGCGCC
CGCTGCTTCTTCTGGCTACCCGGCTCCACCATGCCCCACCAACTACCTGT
TCAGCTGCCAGCCCAATTTGGCCCCAGCTCCTTGTGCCCAGGAGGCCCCA
GCCTATGGATCCGCCGGCGCCTACACAGAACAGGTGCCCCACTACGTGGG
AAGTCCCAACCGAGAGCAGTTGCAGCAATTTCACCAGCGCATTGGAATGG
CGGCTTTGATGGAGGAACTGCGCGGCTTGGGCCAAGGAATCCAGGGTCAA
CAGTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCA
GCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCG
AAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCAC
CCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGA
AATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGT
AGAACTGCCGGAAATCGTCGTGTTATTCACTCCAGAGCGATGAAACGTTT
CAGTTTGCTCATGGAAACGGTGTAACAAGGTGAACACTATCCCATATCAC
CAGCTCACGTCTTTCATGGCCTTACGAAATTCCCGGATGACCATCATCAA
GCCGCCAGGATGTTGATAAGCGATAACCTAGTGCCTTAATTCA
UFO09996.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm32E-RB | 499 | CG16874-RB | 31..379 | 8..356 | 1745 | 100 | Plus |
| Vm32E-RA | 437 | CG16874-RA | 31..379 | 8..356 | 1745 | 100 | Plus |
| Vm34Ca-RA | 491 | CG9271-RA | 256..361 | 119..224 | 230 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11171287..11171635 | 356..8 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 13411318..13411376 | 177..119 | 205 | 89.8 | Minus |
Blast to na_te.dros performed 2014-11-27 00:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 8764..8855 | 93..4 | 113 | 59.8 | Minus |
UFO09996.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:38:50 Download gff for
UFO09996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm32E-RA | 23..379 | 1..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:26 Download gff for
UFO09996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm32E-RA | 23..379 | 1..356 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:41 Download gff for
UFO09996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm32E-RA | 23..379 | 1..356 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 01:08:41 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 16:24:26 has no hits.
