UFO10003.5prime Sequence
1061 bp (935 high quality bases) assembled on 2011-10-19
> UFO10003.5prime
CAGTCGACATGGTTTCCAAAGTGGCTCTCCTCCTCGCCGTCCTGGTCTGC
AGCCAGTATATGGCCCAGGGCGTCTATGTCGTCTCCAAGGCGGAGTGGGG
TGGTCGCGGCGCCAAATGGACCGTAGGCCTGGGCAACTACCTCAGCTACG
CCATCATCCACCACACCGCCGGCTCCTACTGCGAGACCCGTGCCCAGTGC
AACGCCGTGCTGCAGAGCGTCCAGAACTACCACATGGACTCCCTGGGCTG
GCCCGACATCGGCTACAACTTCCTGATCGGCGGAGACGGCAACGTGTACG
AGGGGCGTGGCTGGAACAACATGGGCGCCCACGCCGCCGAGTGGAACCCC
TACAGCATCGGCATCAGCTTCCTGGGCAACTACAACTGGGACACCCTGGA
GCCGAACATGATCTCCGCCGCCCAGCAGCTGCTCAACGACGCCGTCAACC
GTGGCCAGCTCAGCTCCGGCTACATCCTGTACGGTCATCGCCAGGTCAGC
GCCACCGAATGCCCCGGCACTCACATCTGGAACGAGATCCGCGGCTGGTC
CCACTGGTCTGGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCG
GCATCAGCACTTGTCGCCTGCGTAAAATATTTGCCCTGGTGAAAACGGGG
GCGAGAGTGTCATATGTCACGTTAAATCAAACTGCTAACCTCACCAGGAT
GCTGAAACGAAACATATCTCATAAGCCCTTAAGAAGGCCAGGTTCACGTA
ACGCCACTTGC
UFO10003.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SC1b-RB | 1649 | CG8577-RB | 30..585 | 8..563 | 2780 | 100 | Plus |
| PGRP-SC1b-RA | 626 | CG8577-RA | 30..585 | 8..563 | 2780 | 100 | Plus |
| PGRP-SC1a-RA | 588 | CG14746-RA | 30..584 | 8..562 | 2745 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:34:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8713475..8714030 | 8..563 | 2780 | 100 | Plus |
| 2R | 25286936 | 2R | 8709762..8710316 | 8..562 | 2745 | 99.6 | Plus |
| 2R | 25286936 | 2R | 8717084..8717512 | 129..557 | 780 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:34:17 has no hits.
UFO10003.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:09 Download gff for
UFO10003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SC1b-RA | 27..587 | 3..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:30 Download gff for
UFO10003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SC1b-RA | 25..585 | 3..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:16 Download gff for
UFO10003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SC1b-RA | 25..585 | 3..563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:16 Download gff for
UFO10003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8713470..8714030 | 3..563 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:30 Download gff for
UFO10003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4600975..4601535 | 3..563 | 99 | == | Plus |
