UFO10004.5prime Sequence
1028 bp (933 high quality bases) assembled on 2011-10-19
> UFO10004.5prime
CAGTCGACATGACGCTCACCTACTGGATCGGCATGATCATCGGTCCGCCT
AGAACACCATTCGAGAATCGAATGTATTCACTAAAGATCGAGTGCGGCGA
ACGCTATCCGGATGAGCCACCAACGCTCCGGTTTATAACTAAAGTAAACA
TTAACTGCATTAATCAGAACAATGGCGTGGTTGATCATAGATCAGTTCAG
ATGTTGGCCAGATGGAGTCGCGAGTACAATATAAAAACGATGCTGCAGGA
AATCCGTAGGATTATGACCATGAAAGAGAACCTGAAGCTGGCACAGCCGC
CAGAAGGTAGCTGTTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTATGTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGA
AAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTG
GTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAA
CCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCG
AATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTTATTCACTCCAGAG
CGTGAACGTCGTGTCTGAACGGACAGTGACTTCAACCGCCGTCTGTTATC
GACTCAGGCATGACACTCGAGCCGCCGTCGCGTCTCACAATATGATACAG
TGTCCAACAGATAGAACAGTATGGGGAG
UFO10004.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uev1A-RC | 1189 | CG10640-RC | 149..461 | 5..317 | 1565 | 100 | Plus |
| Uev1A-RB | 1609 | CG10640-RB | 303..615 | 5..317 | 1565 | 100 | Plus |
| Uev1A-RA | 1196 | CG10640-RA | 192..504 | 5..317 | 1565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:34:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5363878..5364016 | 317..179 | 695 | 100 | Minus |
| 3L | 28110227 | 3L | 5364082..5364209 | 181..54 | 640 | 100 | Minus |
| 3L | 28110227 | 3L | 5364943..5364991 | 53..5 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:34:24 has no hits.
UFO10004.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:09 Download gff for
UFO10004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uev1A-RA | 189..504 | 1..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:34 Download gff for
UFO10004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uev1A-RA | 189..504 | 1..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:19 Download gff for
UFO10004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uev1A-RA | 189..504 | 1..317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:19 Download gff for
UFO10004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5363878..5364015 | 180..317 | 100 | <- | Minus |
| 3L | 5364084..5364209 | 54..179 | 100 | <- | Minus |
| 3L | 5364943..5364994 | 1..53 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:34 Download gff for
UFO10004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5356978..5357115 | 180..317 | 100 | <- | Minus |
| arm_3L | 5357184..5357309 | 54..179 | 100 | <- | Minus |
| arm_3L | 5358043..5358094 | 1..53 | 96 | | Minus |
