UFO10005.5prime Sequence
1087 bp (872 high quality bases) assembled on 2011-10-19
> UFO10005.5prime
CAGTCGACATGACTGACAAGTTAGATGCGGAACAATTTAACGACGACGAA
CTAGAGGCACCTGCTTGGCTGAATCGTCAATTTATAGAGGAAATTCTGAG
CGCGTACGAAGATTCCCCGGAACTAAAAGTTGTCGATCTTAAAATCACAC
CCGCAAGTGCCCAGGGAGATCACTATGCCAGCGTTATGTTCCGAACAACT
GCAGAGTGTACCACCGCGAAGGGAAAGTTCAGTAGGCCACTAATCATCAA
GGCGATGCCCGAGCAGGATGGACACAAGAAGGATATGCTCAGCGAATCGC
ATCTATTCGAAACCGAGATCGGAATGTACTGCCAGGTTCTTCCGGAATTC
GAGAGAATTCTGCGGGAATCCGGAGACGATACAAAGCTATTTGTTCCCTG
CATTTACCATAGCCTGGAGCCGCGTAAGGTGATGATATTTGAGGACCTTG
TGCCCCAGGGATATTATGTCATTCGAGACCGTCCGGTTGCTCAGGAAGAA
CTCAAAACAGCCTTTGCTAAACTGGCCAAATGGCATGCAATTAGCATGAA
AATACATTAAGGAGCAACCTGACTTCCTAAAGGAGTTTATGTATGGCCTC
TTCGAGATGCCCACTGTAAAGACCGACCCTTTTATTACAACTGGCATGCA
GAGCTTCATTGAAATGCTGGACAGATTACCAGAGCTAAGAAAGTATAAGC
CTCATTTCGAAAAGATAAAAGATAAGTACATGCAACGACTACAAGCTGTG
ATGAAGGAATACCATGAAAATCGAAAGAGTGATGCCTTCTATGTCCTCTG
TCATGGTGACTTCCATCTTCGCAATATGATGTTCAAGAACAACAAGGGAC
GGGACCCCCCGAGGATACCATGCTGCAGGATTTCCAGATTAACCACCCTT
GTCCCATCCACAATTGAATCCTCAGATATTCCATCTAGATATGCTGCGTG
GAGCCGGAACACCGCAGAAGAAATGGGGAATAGGGACTGGATTGTCCCTT
CGTAACCCGTTTGGTTGCCCCCCCTCATAAAGCATTGGATATCCAGGGGT
CAACCTGCCCAACCCAAAGCCCAAACTCTTGGGGAAT
UFO10005.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31300-RA | 1474 | CG31300-RA | 72..1099 | 9..1047 | 4530 | 96.4 | Plus |
| CG31104-RA | 1382 | CG31104-RA | 91..878 | 45..833 | 1160 | 76.7 | Plus |
| CG11893-RA | 1415 | CG11893-RA | 53..760 | 23..731 | 855 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25283691..25284245 | 9..564 | 2730 | 99.8 | Plus |
| 3R | 32079331 | 3R | 25284305..25284705 | 563..968 | 1575 | 95.3 | Plus |
| 3R | 32079331 | 3R | 25289941..25290648 | 23..731 | 765 | 74.2 | Plus |
| 3R | 32079331 | 3R | 25285563..25285978 | 45..460 | 685 | 77.6 | Plus |
| 3R | 32079331 | 3R | 25286135..25286405 | 563..833 | 515 | 79.3 | Plus |
| 3R | 32079331 | 3R | 25304361..25304650 | 156..445 | 310 | 73.8 | Plus |
| 3R | 32079331 | 3R | 25287638..25287958 | 162..482 | 300 | 72.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:34:32 has no hits.
UFO10005.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:10 Download gff for
UFO10005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31300-RA | 62..1044 | 1..993 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:38 Download gff for
UFO10005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31300-RA | 64..1046 | 1..993 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:22 Download gff for
UFO10005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31300-RA | 64..1046 | 1..993 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:22 Download gff for
UFO10005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25283683..25284245 | 1..564 | 99 | -> | Plus |
| 3R | 25284307..25284726 | 565..993 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:38 Download gff for
UFO10005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21109405..21109967 | 1..564 | 99 | -> | Plus |
| arm_3R | 21110029..21110448 | 565..993 | 94 | | Plus |
