UFO10007.5prime Sequence
1089 bp (958 high quality bases) assembled on 2011-10-19
> UFO10007.5prime
CAGTCGACATGGCATCTCTGAGCGAAACACTTCGTAGCCACTGGCCCATC
GCTTTGTTCGGTGTGATCCTCTTCGTGGCTGGGGGCACGGAGCTCTACTG
GAACGAGGGACGAGCCGTGCACAATATGATGGCGCTGGACGAGGCACACG
CCGACATCTACTCGGTGCGCTTCACGGAGGAGGAACAGGAGGTGGGCCTC
GAGGGCAGAATCGTTCACCTATCCGGACCCATTCTCGTGGGCGAACCGCT
CACCGAACCCGACTACAACATTCAGTTGCTGGCGGTGAAGCTCCGGCGAC
GCGTCCAAATGTACCAGTGGGTCGAGGAGGCGGTCGAGCACAACTACGGC
GACAGCGTGGGAACGACGCATTCGGACTCCCGCACCTACTATTACACGCG
GGAATGGCGTGATAAGATCGTGGACTCGCGAAACTTCTACAACCGCCACG
GACACACGAATCCCAGTCACTTTCCCATCGAAAGCCACGTTCAGGTGGCG
GATGCCGTCTTCATTGGACGCTATGAACTGGGTGCGGAGGTGAAGGAGAA
GTTTAACAACTACCAGGAGCTCACTTCGGACATTGGGCCAGAGGATAGTG
GCGTCAAGCTGCATCTGGGCATATATTATCACACCAATGATGTGTTCAAT
CCGGAGGTGGGTGACCTGCGCCTGCTCTTCAGCTTCGCGGGAATGGAGGG
CGAGGTGTTCAGCGTGGTGGGCAAGCTGTCGGGCAACAAACTGGTGCCGT
ACATAACCTCCCGTGGCGTCCAGTGCTGCTCGTCTATCCGGGTGGGCTCA
GTGTCCAGGAAGTGTTCCGGTTGGAGGCTCGTGCCCAGGTCTTGCACACC
TGGTGGTGGCGCTTCGTCGGCTGGCTGCTGATCTTCTTCGGCGTCACCTG
CAACACCAAAAATCCTTCGTCAGGCTGTTTGTACGGTGCCGCTATTGGTG
GCCTTGGCAACCGGATCCTCAGTCCCGGGTTACGGGCCACCCTACTCATC
GCATTTCGCTAGCTCTGAACCATTGGCGCAGTCGCCTGGATCCTGCATCG
TCCCTGGTGATCGGCGCCTGCCTCTGTGGCTGGGGCACT
UFO10007.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8111-RA | 1340 | CG8111-RA | 88..1150 | 9..1075 | 4980 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7914074..7914651 | 911..335 | 2825 | 99.7 | Minus |
| 3L | 28110227 | 3L | 7914708..7915033 | 334..9 | 1630 | 100 | Minus |
| 3L | 28110227 | 3L | 7913854..7913990 | 1075..935 | 340 | 90.8 | Minus |
Blast to na_te.dros performed 2014-11-27 00:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 3069..3098 | 80..51 | 114 | 86.7 | Minus |
UFO10007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:11 Download gff for
UFO10007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8111-RA | 79..1163 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:48 Download gff for
UFO10007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8111-RA | 81..1165 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:29 Download gff for
UFO10007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8111-RA | 81..1165 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:29 Download gff for
UFO10007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7914059..7914651 | 335..928 | 99 | <- | Minus |
| 3L | 7914708..7915037 | 1..334 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:48 Download gff for
UFO10007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7907159..7907751 | 335..928 | 99 | <- | Minus |
| arm_3L | 7907808..7908137 | 1..334 | 98 | | Minus |
