UFO10008.5prime Sequence
913 bp (857 high quality bases) assembled on 2011-10-19
> UFO10008.5prime
CAGTCGACATGATAAGCGCCGAGTGCCATTCAGAAGAATACACCCCAAAT
GACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAA
GCAGGATCCAAACGCGAAGGTGGCGTGTGAAACCGTCGCCAAGACGGGCA
TGATTCTGCTGTGCGGCGAGATCACGTCTAAGGCTGTGGTCGACTACCAG
AAGGTTGTTCGTGAGACAGTGCAGCACATTGGTTATGATGACTCCTCCAA
GGGTTTCGATTGGAAGACACTTAACCTGCTTGTAGCCATCGAGCAACAGT
CGCCCAACATTGCCAACGGCGTTCATATCAACCGCGAAGAAGAAGACGTC
GGCGCTGGTGACCAGGGTATCATGTTTGGATATGCCACCGACGAAACCGA
GGAATGTATGCCCCTAACCGTCGTTTTGGCTCACAAACTAAACGAAAAGA
TTGCTGAGCTGCGTCGCTCAGATGTGTTCTGGTGGGCTCGCCCCGATTCC
AAAACACAAGTAACCTGCGAGTACCTCTTCAATCAGGGATCAGCAGTTCC
CAAGCGTGTCCACACTATTGTAGTGTCCATGCAGCATTCTGAAAAAGATA
TCGTTAGAAACCCTGCGCTCGGAAGTAATGGAGAAAGTTGTTAAAGTAGT
CATTCCCGCCAAATACATTGATGCCAACACCATTGTCCACATCAATCCTT
GTGGGCTTTTTGTAATCGGTGGACCAATGGGTGACGCTGGGCTTACAGGA
AGAAAATCATTGTAGATACTTACGGAGGCTGGGGCGCCCACGGCGGCGGT
GCATTCTCTGGCAAGGACTCACAGTGCGTCACGTTGACGTGTGCATCTGT
AGCGCTGACCGTGCATCACAGTGACCATGAACACATGCACCAACAATCGG
ATCGTTTGTCACG
UFO10008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sam-S-RG | 1971 | CG2674-RG | 158..968 | 9..819 | 4010 | 99.8 | Plus |
| Sam-S-RJ | 2309 | CG2674-RJ | 316..1084 | 51..819 | 3800 | 99.7 | Plus |
| Sam-S-RC | 2380 | CG2674-RC | 387..1155 | 51..819 | 3800 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 112687..113143 | 363..819 | 2190 | 99.6 | Plus |
| 2L | 23513712 | 2L | 110754..110879 | 129..254 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 111004..111118 | 252..366 | 575 | 100 | Plus |
| 2L | 23513712 | 2L | 110405..110483 | 51..129 | 395 | 100 | Plus |
| 2L | 23513712 | 2L | 109751..109793 | 9..51 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:34:55 has no hits.
UFO10008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:12 Download gff for
UFO10008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sam-S-RG | 136..958 | 1..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:52 Download gff for
UFO10008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sam-S-RG | 150..972 | 1..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:32 Download gff for
UFO10008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sam-S-RG | 150..972 | 1..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:32 Download gff for
UFO10008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 109743..109793 | 1..51 | 94 | -> | Plus |
| 2L | 110406..110483 | 52..129 | 100 | -> | Plus |
| 2L | 110755..110877 | 130..252 | 100 | -> | Plus |
| 2L | 111005..111117 | 253..365 | 100 | -> | Plus |
| 2L | 112690..113147 | 366..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:52 Download gff for
UFO10008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 109743..109793 | 1..51 | 94 | -> | Plus |
| arm_2L | 110406..110483 | 52..129 | 100 | -> | Plus |
| arm_2L | 110755..110877 | 130..252 | 100 | -> | Plus |
| arm_2L | 111005..111117 | 253..365 | 100 | -> | Plus |
| arm_2L | 112690..113147 | 366..822 | 99 | | Plus |
