UFO10009.5prime Sequence
1090 bp (955 high quality bases) assembled on 2011-10-19
> UFO10009.5prime
CAGTCGACATGATGCTAATGCACGAGAAACTCATGGCCGGGCAGTTCTTC
GATCTCAAGACTGATCGCAAGCCCCTGATGCACCACCACCAGTACCAGCA
CCACCAGCAGCAACCACTGCACCACTTGCCGCACAGCCAATTGCCGGTTC
AGGGATCCTTGGGCCTACCCAAAATGGATCTGTACACGGCCTACGCCTAC
CAGCAGCAGTTGCTGGGAGCTGCCCTCAGTCAGCAGCAACAACAGCAACA
GCAGCAGCAGCAACATCAGCAGCTGCAGCAGCAGCATACCTCCTCTGCAG
AGGTCCTGGATCTTTCCCGTCGATGTGACAGCGTAGAGACACCCAGGAAG
ACTCCCTCGCCGTATCAAACAAGCTATAGCTACGGCAGTGGTTCCCCCTC
GGCTTCGCCCACCAGCAATCTTCTGTATGCCGCCCAAATGCAACAGCAGC
AACATCAGCAGCAACAACAGCAACAGCAGCAGCAGCAACAATTAGCCTCC
CTGTATCCCGCTTTTTACTACAGCAACATCAAGCAGGAGCAAGCCACGCC
CACTGCTGCTCCGCCCAAGGTTACTGCAACCGCTAACCTTCTGCAAACCT
TTGCTGCCGCCTCTGCTGCGGCCGCCGCTGCTGCTGCCGCTTCTTCGACC
AACTCACCAAGACCCGCCAGCAACGCCAGCACCATGCAGATAGACGTTCT
GGAGAATCCCCTGTCACCGGCTGTTGAGGCCACCACGCCAACCACCTCCA
GCAGCGGCGAGGCGGGAAAGAACACCCGTCCCTTCAAGGCCTTTCCCCGG
GATCCCTTGGTCATAGCTGCCAATTTCGCAGCCACTGATGTCCTTTTTGG
ACATCCGCGAGTGGAAGCGCTACACGGAATACCGGAAGCGAGTGGCTTGA
GCACGTCCGCATGCTCCACGGAGATCGCGCACCGTAACCAAACCCAAAAT
GCCGAAGTCCAACTCAGGAGTGATCCGTCAACGAAAGGCAGCCTCCTCTG
CACAACAGCGAAAGCGAGATCGCGCTGCTGCGGAAGGAGTCAGCGACTTG
TGACTCCAAGCGGCACTCCGGAGACCAGTTCGGCCACAGA
UFO10009.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gt-RB | 1780 | CG7952-RB | 116..1162 | 12..1057 | 4655 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2427824..2428726 | 966..63 | 4090 | 97.6 | Minus |
| X | 23542271 | X | 2428801..2428852 | 63..12 | 260 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2387 | 641..601 | 115 | 75.6 | Minus |
UFO10009.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:13 Download gff for
UFO10009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gt-RB | 101..1165 | 1..1063 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:54 Download gff for
UFO10009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gt-RB | 105..1169 | 1..1063 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:35 Download gff for
UFO10009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gt-RB | 105..1169 | 1..1063 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:35 Download gff for
UFO10009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2427724..2428725 | 64..1063 | 96 | <- | Minus |
| X | 2428801..2428863 | 1..63 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:54 Download gff for
UFO10009.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2321757..2322758 | 64..1063 | 96 | <- | Minus |
| arm_X | 2322834..2322896 | 1..63 | 92 | | Minus |
