UFO10015.5prime Sequence
619 bp (553 high quality bases) assembled on 2011-10-19
> UFO10015.5prime
CAGTCGACATGGAGGCAGAACAACAAGAATTCGCTGTGAAACAATTCATT
GATCTCTGCAACAATCTAGGTGCTAACTGCAGCACGACGACAGCCACATC
CCCGTCAACTTCCTCCTCCTCAGCCAGCAGCACGCAGAACTTAATAGCAG
TAGTGCCGCCACAGTTGCAGCAGCTGCAGGTGCAATTACCGGCGCCAGGT
GGAGGAGGAGGAGCAGGTGCAGGAGGAGGAGGTGGTGGAGGTGGGGGAGC
TGCGCCTGTGAGGCGCCACATCTCGCATACGACAGCCGTGAAGTTTTTGT
ACGCCCGTAAATTTGATATACCACGAGCCGTCTCACTGTACGAACAGCAT
GAACAGATCCGCCTGAATGAGTATCTATATAACATCGATCCGGATGTGGA
GCCCTTGCGCTCCGAGTTGCAGACCGGCAAGTTCATAATCCTGCCCGCAC
GCACTTCCAGTGGCGCTGCCATCGCCCTTTTCACCGCCAATCGACACAGT
CCGCTGAGCGTTTCGCACACAAACACGCTGCAGGGCATCGTCTATCATCT
GGACAGTGCGCTCCACGATTCGGAGACGCAGCGTGCCGGGCTCGTGTTTA
TCTACGACATGAGCGGGCT
UFO10015.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0232-RC | 3053 | CG32697-RC | 276..883 | 9..616 | 2935 | 98.8 | Plus |
| l(1)G0232-RG | 5668 | CG32697-RG | 488..1071 | 33..616 | 2815 | 98.8 | Plus |
| l(1)G0232-RF | 5646 | CG32697-RF | 466..1049 | 33..616 | 2815 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9643957..9644367 | 443..33 | 2010 | 99.3 | Minus |
| X | 23542271 | X | 9643715..9643888 | 616..443 | 810 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:35:24 has no hits.
UFO10015.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:15 Download gff for
UFO10015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RC | 38..654 | 1..619 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:07 Download gff for
UFO10015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RC | 269..885 | 1..619 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:46 Download gff for
UFO10015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0232-RC | 269..885 | 1..619 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:46 Download gff for
UFO10015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9643713..9643887 | 444..619 | 97 | <- | Minus |
| X | 9643957..9644367 | 33..443 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:07 Download gff for
UFO10015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9537746..9537920 | 444..619 | 97 | <- | Minus |
| arm_X | 9537990..9538400 | 33..443 | 99 | <- | Minus |
