UFO10016.5prime Sequence
1118 bp (994 high quality bases) assembled on 2011-10-19
> UFO10016.5prime
CAGTCGACATGTCCAACGAGATCTACGACTCCTCCAATTCGCAGCTAAGT
AGCGACGAGTATAGCCACGAGGAGGAGGAATACGACGCTCTAATGGACGC
GGCGGTGAGCAAGCAACGACCCCAAAAGACAAAATCCAAGGGATCCGAGT
CCGAGAAACCCGGAAATGGAGCTCCAGAATCGGCGGCTGCCACTGAGAAA
AATGAAAAGCCAGATGACGATGCGGTGCCACCTTCCACGCGCTCAGAAAC
AATTCGGCGGATCCGGCAATTGCAGTTACAGCGTGGCAGGCTGCCCAATC
TTTACTTCAAGCGTCGCAGTATTCGTTGGCTGCGACCCAATAAAATGGAC
TACAACAGCTATTTTGACGGCCTGAAGGACTTGCTGCCCAAGCGTAAATT
GAAGCACCTGGTTCGCTTCCATGACAGGCAGCGCAGAACCTACGACAGCA
GGAGCATCAGTCGTAGTCGCAGCCACAGCCGCAGTCTTAGCCGAAGTTGC
AGTCGCAGTCGTAGTCGTAGCTATTCTCGCAGCCGCAGCGGCAGTGGTTC
GCCGGAACTCATTTGCCTTGACGACACGGAGAACGAGGATTCGCCTGAGA
AACCAGAGCAAGAGCCGGCAAGGGTTACGCCCATCAAGGAAAATAAGCCT
ACGCTTCCGGCTCCACCCCAACTAAACTACGAGCTGCCAGAAAGGAAGAA
AGCAAACCCACTTGGAAACAACGAAAACGGTGCCTCTATCCTCGACGAGT
TCCTGGTAAAGAAAGATCCCCAGGAACCGGTCTTCGACTACGGTAAACTC
TCAGCGTGTCGGGAATTGGAACAGGCTCTAAAGGACCGGTCGCGAGATGC
GCCAAATGAGGCAGAGTCGCTTGTGTTTGATGCCACTCTTAAAAGACGCC
GTTCGGTAACACCGCCCGCTAGCGAGAGAAGCGCAAGAATGAAGTCGTGG
ATGATATATATTGGGGTTTTCACCGGTGCAGCACAGAAGCCAATGAGCAG
CCTCCCACCAATTAAATCTAGATGCCCACCACTTCATCGACTTATCCTTC
TTCAACGTCAGCAGCTTTAAGCCTGGACCACCGTATACCTTGCTTCGCCT
ACTGCGCAAGCAGCTGAA
UFO10016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RAF2-RC | 4076 | CG4877-RC | 250..1352 | 9..1105 | 4930 | 97.3 | Plus |
| RAF2-RA | 4082 | CG4877-RA | 256..1358 | 9..1105 | 4930 | 97.3 | Plus |
| RAF2-RB | 4006 | CG4877-RB | 180..1282 | 9..1105 | 4930 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16387020..16387759 | 328..1064 | 3110 | 96.5 | Plus |
| 3L | 28110227 | 3L | 16386637..16386957 | 9..329 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:35:33 has no hits.
UFO10016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:16 Download gff for
UFO10016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4877-RA | 230..1308 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:11 Download gff for
UFO10016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 172..1250 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:50 Download gff for
UFO10016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RAF2-RB | 172..1250 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:50 Download gff for
UFO10016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16387021..16387771 | 329..1075 | 96 | | Plus |
| 3L | 16386629..16386956 | 1..328 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:11 Download gff for
UFO10016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16379729..16380056 | 1..328 | 98 | -> | Plus |
| arm_3L | 16380121..16380871 | 329..1075 | 96 | | Plus |
