UFO10017.5prime Sequence
1071 bp (972 high quality bases) assembled on 2011-10-19
> UFO10017.5prime
CAGTCGACATGGCCAGCGTATGGAAGCGATTGCAGCGCAATTTCAAGCGA
GCCGCCAAATTCCAGTTCACCGCATCGTACCACGATCTGCATCTGGAAAC
CACCGCCAAGTGGCGGCCGTCGAACCTCTCTATCGTTTGGACCAGAAGAT
CTAGACGAGTGGCCAGTGCTCCTTTGCCATGGGAGCCGGACATGATGAAC
CCCTTGGTGGGCAATATATCCTGGCCAGTGCCCGACAATCACACCATATC
CGTCACCCTGTTTAAGGATCCTCGGACACACGAGCTGGAGGACAAGGACT
GGACGTTTGTCATCGAAGATGTCACTCCAATGGGCAAGAAACGTGTGCTG
GCCAATGCCAGCATTAATATGAGGAAGTATGCCAGCATAGAATCCACTCA
GCAGAGCTTTACCTTGAGCCTAAAGCCAGTCTCGAAGAAGATTACTGCAG
CCAGTTTGGAGCTCACGATTAGCTGTGTATTTTTGCGAGAAGGAAAGGCT
ACAGACGAGGACATGCAGAGCGTTGTCTCCATGATGTCCGTGAACAACAA
TGATGTGGCGCCTTTGGATGACTTGGAGGATATTCCAGATCTTGATGGCT
TTAGTGAAATTACGGACAATTTTAATGACTTTACACAGCAACTGGAGCAT
ATGACAACTAGCCTAAATGGCTGCATTGATGTGGCCACGCCTCAAAGTGA
CGCCGACGGCAAGCGGGAAGCTGCTAACAAGTTAGACTTGCCCACAGCTG
CATCCGGTGGTTCTAGTGGTGCTGAAGAGTCCCTGAAAACGCCGAATGGA
TTGCAGCATGTGGTGGACCAAACGCCAATAAAGTCACCAGATGAAGTAAA
GCAGCCAAAGCAGACGCCGGTGGAGTCATTGAGTCCAAAACCGACGAGGA
CTTTGACAATGGTCACCTCACGCACTCGACCACGTAACAGATGATGTGAG
CAAGAGAGAGCTTATCTCCTGAAGAGATGACAGACTAGTGAAGTGTGAGA
GTCACAGACTTCGGACACGCCTGCACAGCTGACTCTAGCACTATGCTGAC
TGATAGTGCTGACAGTCAATT
UFO10017.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ehbp1-RG | 3829 | CG15609-RG | 383..1308 | 9..929 | 4485 | 99.2 | Plus |
Ehbp1-RF | 4361 | CG15609-RF | 387..1077 | 9..699 | 3455 | 100 | Plus |
Ehbp1-RI | 4152 | CG15609-RI | 387..1077 | 9..699 | 3455 | 100 | Plus |
Ehbp1-RF | 4361 | CG15609-RF | 1143..1378 | 699..929 | 1035 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17013787..17013997 | 322..112 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 17013285..17013481 | 699..503 | 985 | 100 | Minus |
2R | 25286936 | 2R | 17012498..17012709 | 909..699 | 980 | 98.6 | Minus |
2R | 25286936 | 2R | 17013546..17013727 | 502..321 | 910 | 100 | Minus |
2R | 25286936 | 2R | 17014948..17015052 | 113..9 | 525 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
micropia | 5461 | micropia DMDM11 5461bp | 339..379 | 846..886 | 124 | 78 | Plus |
micropia | 5461 | micropia DMDM11 5461bp | 5324..5364 | 846..886 | 124 | 78 | Plus |
UFO10017.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:16 Download gff for
UFO10017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15609-RG | 375..1300 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:17 Download gff for
UFO10017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ehbp1-RG | 383..1308 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:56 Download gff for
UFO10017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ehbp1-RG | 383..1308 | 9..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:56 Download gff for
UFO10017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17013546..17013727 | 321..502 | 100 | <- | Minus |
2R | 17013789..17013996 | 113..320 | 100 | <- | Minus |
2R | 17014949..17015052 | 9..112 | 100 | | Minus |
2R | 17012474..17012708 | 700..929 | 97 | <- | Minus |
2R | 17013285..17013481 | 503..699 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:17 Download gff for
UFO10017.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12901051..12901232 | 321..502 | 100 | <- | Minus |
arm_2R | 12901294..12901501 | 113..320 | 100 | <- | Minus |
arm_2R | 12902454..12902557 | 9..112 | 100 | | Minus |
arm_2R | 12899979..12900213 | 700..929 | 97 | <- | Minus |
arm_2R | 12900790..12900986 | 503..699 | 100 | <- | Minus |