Clone UFO10018 Report

Search the DGRC for UFO10018

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:100
Well:18
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptSpt20-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO10018.5prime Sequence

1001 bp (908 high quality bases) assembled on 2011-10-19

> UFO10018.5prime
CAGTCGACATGCAAAGCCTGGACTCCTCATGCCAAGAAGCCGACTTTATT
ATAAATGACACGCTCAAAAAGTTAAAGGGTTCCAGCAACGCGGACCATGT
CCAGGGCCTAGCGGTCCACGCCCACGGTTCGGGTGTCCACCAGACGCAGT
TCGTCCAGTACGGCACGTCTGGATCCTCGCCGCAGCTGCAGCCGCAGCAG
TCCTACCATCAGCTGCATCCCACGCTCCAGCAGCAGCAGTTCGCCTCCTC
GAGCAGCAAATCGTACCTGGAGACCAGCCTATTGCAGGCTATACCACAGA
TTCCTGCCCAGCCGCCCATTTGTATCTTCGATGACGACGAGTCCCCCACC
GAGGGCACTGGCGGCTCACTGGGCAGCCTGCTCACGGAGCCGACCTCGGC
CACGCCCAGCGGCCTGCCCACTGCAATTGCTCCGTCGCCCTCCTCGTGCT
CATCCTCCACCACAACGATGTCGAACTTCAACTCAATCACGTCGCCGTCG
CCGGTGGTGCCCGATCTTCTGCTGTCGACACCGCCGGGCGTTAACTCCAG
TCTAAGCAATAGCTCAACGGGAGCGGCCAGTGTGTCCAGCAAGAAGTCCG
AGAAGCGGCCACCCTCCGCCAACTCAACAGCCAGTGGAGGCGGCCACCAC
CTGCACCATCATCACCTCCACCAGACGCACAATCACCATGTCCTGGCATC
GCCCACGTCGTCGCCCAGCAAGCGCCAGAAGTCCAATAGCAGTAGCAAGG
AGAGCAGCTCCTCTAGTCGCAGCTCAGCTATACCGCGCATCAGTCTCACA
GCACTCGTCGCGCATCAGCGGCGTGCGCGCGTGCTCTCATACACACAGCA
CTCTCGCTGCATCGCACACAGTCTATCTGCAGAATAGACTGACTGATGTA
CTACAATATGCAGAGTAGACACACTATGCTGGCGACACTGCTGCGAGATG
TAATGCATCATCGATCCACGATGAGTATGTGCACAGGCAATGAGAAGTCA
C

UFO10018.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Spt20-RC 7335 CG17689-RC 642..1461 8..820 3925 99.1 Plus
Spt20-RD 7161 CG17689-RD 642..1461 8..820 3925 99.1 Plus
Spt20-RA 8007 CG17689-RA 642..1461 8..820 3925 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13503456..13504195 45..784 3700 100 Plus
3L 28110227 3L 13503348..13503384 8..44 185 100 Plus
Blast to na_te.dros performed 2014-11-27 00:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1087..1146 179..238 129 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2751..2852 138..239 122 61.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6786 179..238 111 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6807 179..238 111 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6856 180..239 111 65 Plus

UFO10018.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:17 Download gff for UFO10018.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt20-RC 603..1416 1..810 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:22 Download gff for UFO10018.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt20-RA 636..1449 1..810 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:59 Download gff for UFO10018.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt20-RA 636..1449 1..810 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:59 Download gff for UFO10018.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13503456..13504225 45..809 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:22 Download gff for UFO10018.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13496556..13497325 45..809 99 -> Plus