UFO10018.5prime Sequence
1001 bp (908 high quality bases) assembled on 2011-10-19
> UFO10018.5prime
CAGTCGACATGCAAAGCCTGGACTCCTCATGCCAAGAAGCCGACTTTATT
ATAAATGACACGCTCAAAAAGTTAAAGGGTTCCAGCAACGCGGACCATGT
CCAGGGCCTAGCGGTCCACGCCCACGGTTCGGGTGTCCACCAGACGCAGT
TCGTCCAGTACGGCACGTCTGGATCCTCGCCGCAGCTGCAGCCGCAGCAG
TCCTACCATCAGCTGCATCCCACGCTCCAGCAGCAGCAGTTCGCCTCCTC
GAGCAGCAAATCGTACCTGGAGACCAGCCTATTGCAGGCTATACCACAGA
TTCCTGCCCAGCCGCCCATTTGTATCTTCGATGACGACGAGTCCCCCACC
GAGGGCACTGGCGGCTCACTGGGCAGCCTGCTCACGGAGCCGACCTCGGC
CACGCCCAGCGGCCTGCCCACTGCAATTGCTCCGTCGCCCTCCTCGTGCT
CATCCTCCACCACAACGATGTCGAACTTCAACTCAATCACGTCGCCGTCG
CCGGTGGTGCCCGATCTTCTGCTGTCGACACCGCCGGGCGTTAACTCCAG
TCTAAGCAATAGCTCAACGGGAGCGGCCAGTGTGTCCAGCAAGAAGTCCG
AGAAGCGGCCACCCTCCGCCAACTCAACAGCCAGTGGAGGCGGCCACCAC
CTGCACCATCATCACCTCCACCAGACGCACAATCACCATGTCCTGGCATC
GCCCACGTCGTCGCCCAGCAAGCGCCAGAAGTCCAATAGCAGTAGCAAGG
AGAGCAGCTCCTCTAGTCGCAGCTCAGCTATACCGCGCATCAGTCTCACA
GCACTCGTCGCGCATCAGCGGCGTGCGCGCGTGCTCTCATACACACAGCA
CTCTCGCTGCATCGCACACAGTCTATCTGCAGAATAGACTGACTGATGTA
CTACAATATGCAGAGTAGACACACTATGCTGGCGACACTGCTGCGAGATG
TAATGCATCATCGATCCACGATGAGTATGTGCACAGGCAATGAGAAGTCA
C
UFO10018.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt20-RC | 7335 | CG17689-RC | 642..1461 | 8..820 | 3925 | 99.1 | Plus |
Spt20-RD | 7161 | CG17689-RD | 642..1461 | 8..820 | 3925 | 99.1 | Plus |
Spt20-RA | 8007 | CG17689-RA | 642..1461 | 8..820 | 3925 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13503456..13504195 | 45..784 | 3700 | 100 | Plus |
3L | 28110227 | 3L | 13503348..13503384 | 8..44 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1087..1146 | 179..238 | 129 | 68.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2751..2852 | 138..239 | 122 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6786 | 179..238 | 111 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6807 | 179..238 | 111 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6856 | 180..239 | 111 | 65 | Plus |
UFO10018.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:17 Download gff for
UFO10018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt20-RC | 603..1416 | 1..810 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:22 Download gff for
UFO10018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt20-RA | 636..1449 | 1..810 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:59 Download gff for
UFO10018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt20-RA | 636..1449 | 1..810 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:59 Download gff for
UFO10018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13503456..13504225 | 45..809 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:22 Download gff for
UFO10018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13496556..13497325 | 45..809 | 99 | -> | Plus |