UFO10019.5prime Sequence
658 bp (477 high quality bases) assembled on 2011-10-19
> UFO10019.5prime
CAGTCGACATGCCACAGCCAAAGCAAAACCAGCAGAAACAGCCACAGCCA
CAACAGCAAAAGCCGCTGCAGAAACATTCCAGCACCAGCTCCACGATCAT
CGCCAAGCCGGAAAAGGAACGGGAACGCACGCAGACGATCGGCGAAACCG
ACATGGATCAGTCGGTGCTCAATGGACTGGCAGTGGGCGCAGATGGAACC
GCCGGCTACCATGGTCACAAGCGAGAACTTGGTCACAGAGTGTTTGTGAA
CAGATCGCTGCATTTGGAGAATATCAAGTACTATGGCTTCGATATGGACT
ACACCTTGGCAAAGTACAAGTCACCGCAGTATGAGCAGCTGGGGCTTCAA
ACCTGGGTCAAGGAGCGCCTGGGTCTTCATGGGGCTACCCCCAAAGGGAG
ATCCCTGCAGTTTCGAGTACGATCCCCACCCTCCCCAGTACGCGGGCCTG
TGGGTTTCGACACCTCTTCCTACGGGAATCCTGCCTGAAAGTGGGAATGC
CCTACCGGGAAACATTCCGGGTTCTGCCGTTCCATGGCTTCCCAGGTTTC
TCCAAACATTCACCAAGGTGTAAGAAGTTTGTATTACCCAAACAAGGTTT
TTTGAAACTGGGACCAATCCCGGTGGTCTATTGGTCCTGGAAATACTCCT
TCTTTCAA
UFO10019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32549-RE | 2509 | CG32549-RE | 372..933 | 9..611 | 1935 | 91.7 | Plus |
| CG32549-RH | 2677 | CG32549-RH | 771..1107 | 234..611 | 810 | 86.8 | Plus |
| CG32549-RG | 2806 | CG32549-RG | 900..1236 | 234..611 | 810 | 86.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18403985..18404214 | 238..9 | 1150 | 100 | Minus |
| X | 23542271 | X | 18392838..18392914 | 311..235 | 385 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6853..6947 | 11..106 | 180 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2595..2678 | 27..108 | 163 | 70.9 | Plus |
UFO10019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:18 Download gff for
UFO10019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32549-RE | 339..824 | 1..508 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:25 Download gff for
UFO10019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32549-RE | 362..847 | 1..508 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:02 Download gff for
UFO10019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32549-RE | 362..847 | 1..508 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:02 Download gff for
UFO10019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18403985..18404224 | 1..238 | 98 | | Minus |
| X | 18392837..18392910 | 239..312 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:25 Download gff for
UFO10019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18298018..18298257 | 1..238 | 98 | | Minus |
| arm_X | 18286870..18286943 | 239..312 | 98 | <- | Minus |
