UFO10020.5prime Sequence
1055 bp (953 high quality bases) assembled on 2011-10-19
> UFO10020.5prime
CAGTCGACATGGATGTGGATTTACTGCCGCTGAGAAAGCGAATAACGAAC
ACTTTCAAGTTATGTGGATTCCTGATCCGCTCGGAGAACAGTTCCTACCT
GGCGGAGCAGCTGCTGCCCTTCGACGCAGCGGAACGGGACAAATGGCTGA
CGGTGATCACCGAGAATCTCCAAAGCCAAAAGCTTTTGACGCCTCATGTG
GAGCGAGCCGCCCTGGAGAAGGCTATCAATGAACTTAACCGGGTGGGATT
GGATGAAGGGGAGACGGTCTTTGCCCTGATCGATGCCTTTACGGTGCCCC
GTTTTCGGTACAACCAGCGGATAAAGAAATTCGAACTGGACACACAGCCG
CGCCAGTTGCTGACCGCTCCGCGCATGAAATCGGACTACATGCAGCAACG
ATATGCCATGTTACTACAGAAAACTCTGCGACACGACCTCTTTGCCCCAG
CCGTCATCCAGGATGGCGTTGGAGCCGAGGCCCAGGCCAAGAAATTTAAG
CTCCAGTTCGCTGAGAACCTGCTGGCCACGTCGGCGATGAAGGAGGCAGT
TGTTTTGGGACTACTTACCCAGCTTAAGGAGGGCAAGTTCTATGTCGAGG
ATCCCACGGGTTGCGTCCAGTTAGATCTCACTGGAGCCCGTTTCCATGCC
GGCTTCTTCTGCGAGGGCTGCTTTGTTTTAGCCGAGGGCAACTATAACAA
CGGTGTGCTCAAGGTTGATGGCCTGGGCTTTCCACCCGCGGAACCGGCAA
ACAGCAGTCGAGCATTTTTCGGCACCGCCAACACTTGGGGCGGTGAATCT
GCTAAGCTGCTGAAGTACTCAGCCGGACTACAGGAACTGGAGCGTACCAA
CACGGAAACAACCATTGTTTTCCTTTCCGACGTACTGTTGGATCTGCCCG
GTTGTCATGAGAGCTGCGCAGTGTTCGTGTGCTATGATCCTGCCCGCCGC
AGCTATATGCTCATGGCCCCTTCACGCAGCACAGATCATCATGAGCTGAG
CATCACTAATGCATGGGTGCCTTGGCAGCTGCTGCAGCACTGAGAGCAAC
GGATT
UFO10020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-epsilon58-RA | 1688 | CG10489-RA | 57..1095 | 9..1031 | 4425 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5896674..5897379 | 714..9 | 3320 | 98 | Minus |
| 3L | 28110227 | 3L | 5896423..5896617 | 909..714 | 885 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:36:10 has no hits.
UFO10020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:18 Download gff for
UFO10020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pole2-RA | 1..1058 | 9..1049 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:30 Download gff for
UFO10020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pole2-RA | 57..1114 | 9..1049 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:04 Download gff for
UFO10020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-epsilon58-RA | 57..1114 | 9..1049 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:04 Download gff for
UFO10020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5896261..5896616 | 715..1049 | 91 | <- | Minus |
| 3L | 5896674..5897379 | 9..714 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:30 Download gff for
UFO10020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5889361..5889716 | 715..1049 | 91 | <- | Minus |
| arm_3L | 5889774..5890479 | 9..714 | 98 | | Minus |
