UFO10022.5prime Sequence
1056 bp (870 high quality bases) assembled on 2011-10-19
> UFO10022.5prime
CAGTCGACATGCATCGCAGCATGGATCGCAGAAGGAGCAGAACCCCGAGG
ACTCTGCCAGTCTGCTGGATTCTGCTGTGCCTGGTGGCCTGGACTGTTGC
AGATGACTGGTCTCTAAGTTGCGCCTCCAACTGCACCTGCAAGTGGACCA
ATGGCAAGAAGTCGGCCATCTGCAGCTCCCTGCAGCTGACCACCATTCCG
AACACCCTGAGCACAGAGCTGCAGGTGCTGGTGCTCAATGACAACCACAT
CCCGTACCTCAACCGGGAGGAGTTCTCCACTCTGGGCCTGTTGAACTTGC
AGCGAATTTACCTCAAGAAGTCCGAGGTGCAGTACATACACAAGGAGTCG
TTCCGCAATCTGAAGATACTGGTGGAGATCGACCTGTCGGACAATAAGCT
GGAGATGCTCGACAAGGACACCTTCATGGGGAACGATCGCCTGAGGATAC
TCTATTTGAATGGAAATCCCCTCAAGCGCCTAGCGGCTTATCAGTTTCCT
ATTCTGCCCCATCTGCGCACCTTGGACATGCACGACTGCCTCATCTCCTA
CATTGATCCCATGTCCCTGGCTGATCTTAATCTGCTGGAGTTCCTCAACC
TAAAAGAACAACCTGCTGGAGAGCCTGAGCGAGTACGTGTACCAGCACAT
GGCCAATCTGAAGACGCTCTCCCTGGAGGAGAATCCCTGGCAGTGCAACT
GCAAACTGCGAAAGTTCCGGGGCTGGTATGTGAACAGCCGCCTGAGCTCC
GTGAGTCTGGTATGCAAGGGCCCTCCGGCCCAAAAGGATCGCACATGGGA
TAGCGTGGAACGACGAGCTCTTCGGCTGTCCGCCGCGCGTGAGATCCTTC
AGCAATGAAGAGGTGCAGAACTTCGACATCGGAAGTATGTACCACCTTTC
GGCTGCTGGTGGTACGGGGATCCCCTGCCGGAAGTGGCCTTGGAACTGAA
TGGTGAGATAACTGGACCACGACAACTTGCTCTTCCGATCCGGAAAGTGT
CCGCCCTCCGGATAGCCTGGTGGAATATTCTAACCGGTTTCCACAGGGAC
GACCTT
UFO10022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kek6-RB | 6616 | CG1804-RB | 1069..2091 | 9..1041 | 4450 | 96.2 | Plus |
| kek6-RA | 6616 | CG1804-RA | 1069..2091 | 9..1041 | 4450 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31659149..31660070 | 59..985 | 4010 | 96.8 | Plus |
| 3R | 32079331 | 3R | 31658918..31658969 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:35:09 has no hits.
UFO10022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:13 Download gff for
UFO10022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kek6-RA | 1..980 | 9..994 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:26:58 Download gff for
UFO10022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kek6-RA | 1062..2048 | 1..994 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:37 Download gff for
UFO10022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kek6-RA | 1062..2048 | 1..994 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:37 Download gff for
UFO10022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31658911..31658969 | 1..60 | 93 | -> | Plus |
| 3R | 31659151..31660066 | 61..981 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:26:58 Download gff for
UFO10022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27484633..27484691 | 1..60 | 93 | -> | Plus |
| arm_3R | 27484873..27485788 | 61..981 | 97 | <- | Plus |
