UFO10023.5prime Sequence
1031 bp (932 high quality bases) assembled on 2011-10-19
> UFO10023.5prime
CAGTCGACATGCCCTTCGGCCGCAAGTCCCCGCTGGAGGCACTGGCCCTT
CCCGGCGTCATGCTCGCCTACAAGTACAGCCAGTTCCGCCAGCGCCGCCG
GGAGGCCGCCAGCCGACGGGTCACCGAGCGCGAACTCTCGGCGCTGCACC
ATAAAATCGACAAACTACTGAGTAAACTGGAGGAGGAAAGCGAGCCGGAT
CCTCCAACCTCCCAGGAGGACGAATGTGTGATCTGCATCAATGCCCGGGC
CACCATGCAGACATCGCCATGTGGCCACCGCGTCGTCTGCCGCCGCTGCT
TTGTGAAGACCATTCAGAGTGCGGTGGCCCAACGACTGTTGCCCCTTCGC
TGCGTCATTTGTCGAGCGCGGGTCAATCGTCTGACCTCGTCCTCGGGCAC
TTGGCGAATCCAGGAGTCGGCCAGCAGCTACTCAATGGGCGCCAAGAGTT
GGGCCTCCGCCGGAGTGGCCGCCGGCGGTGTGGTACCCTCGGCGAGCTCC
TACTCGATGAACGATGCGCACAGCGGCCACCATTCGTTCCACCAGCCCAC
GCTGCACAAGTCGCCGGTGGGACGGCATCACCCGCATCATTACGCCGCCC
GAGGATCAGCCCATGCTCGAGTCTCCCAGTCGGACAGCCTGTACTCGATG
AGCTCGACGGGATCGGCGGCTTCATCGGCCTCCGGTTATTCACACTACTC
CAAGACGTCTTCCATATCGAGCAACGGTCCCTGCTCACCGGCCTCGCCGG
CCGTGGCTTCCAGCTCCAATCACCTGGCACCGCCATCGCCCACCACCCAC
CATCACAGTCATAGTCTGGCCTCACCCACTCCATCGGGATCATCGGGCAG
TTCCCTTTCACCGCGGGAAAATGGAACTTCCCTCTAGGGCTGTGCGCTCA
ACTCCCCACTACTCGCCCAGTGGAGTGAGAGTCTATACACATCGAGGAAT
GACACTGCAAGCACGAGCTCGCACATTCTACCAGTTGATCCCATCGTAGC
ACTAACAGCAGTAGCCTTTCTAGCAGCAGTA
UFO10023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8910-RA | 3406 | CG8910-RA | 448..1319 | 9..880 | 4345 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16877316..16878037 | 880..159 | 3595 | 99.9 | Minus |
| 2R | 25286936 | 2R | 16894119..16894269 | 159..9 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:35:17 has no hits.
UFO10023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:14 Download gff for
UFO10023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8910-RA | 440..1318 | 1..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:03 Download gff for
UFO10023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8910-RA | 441..1319 | 1..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:41 Download gff for
UFO10023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8910-RA | 441..1319 | 1..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:41 Download gff for
UFO10023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16877316..16878037 | 159..880 | 99 | <- | Minus |
| 2R | 16894120..16894276 | 1..158 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:03 Download gff for
UFO10023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12764821..12765542 | 159..880 | 99 | <- | Minus |
| arm_2R | 12781625..12781781 | 1..158 | 97 | | Minus |
