UFO10026.5prime Sequence
1109 bp (946 high quality bases) assembled on 2011-10-19
> UFO10026.5prime
CAGTCGACATGAATTCCGAGATTAATCAACGATTCCTGGCCCGCGGCTCG
CAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGATTCCCAGGG
CATGAATGCCGCCGTGCGAGCCTGTGTCCGTATGGCCATCTATTTGGGCT
GCAAGGTCTACTTCATTCGTGAAGGCTACCAGGGCATGGTGGATGGTGGC
GACTGCATCCAGGAAGCCAACTGGGCCTCAGTCTCATCCATTATCCATCG
TGGTGGCACCATCATTGGCTCCGCCCGTTGCCAGGACTTCCGTGAGCGTC
AGGGTCGCTTGAAAGCCGCTAACAACCTGATTCAGCGAGGAATCACCAAT
CTGGTGGTCATTGGAGGCGATGGCTCCCTCACGGGCGCCAATCTGTTCCG
TCAGGAGTGGTCCAGCCTGTTGGACGAGCTGGTCAAGAACAAGACCATTA
CCACCGAGCAGCAGGAGAAGTTCAATGTCCTGCACATCGTTGGATTGGTT
GGCTCCATCGACAACGATTTCTGTGGCACTGACATGACCATCGGCACGGA
CACGGCACTACATCGCATCATCGAGGCAATCGATGCCATCTCCAGTACAG
CCTACTCCCATCAGCGCACCTTCATCATGGAGGTCATGGGTCGTCATTGC
GGTTACTTGGCCATATCGGCAGCCATAGCCACAGAGGCTGATTTTATGTT
CATACCCGAGGAGCCGGTGTCAGTCAATTGGAAAGACGAGATCTGTGTCA
AGCTCCACCAGGAGCGATCTGCTGGCCAGCGTCTGAACATCGTGATTGTG
GCCGAGGGAGCCATGGATCGCGAGGGTCATCCCATCACAGCCGAGGATGT
AAAGAATGTGATCGACGAGCGTCTGAAGCACGATGCCCGCCTCACTGTCT
TGGGTCACGTGCAGCGCGGTGCAATCCCAGTGCCTCGATCGTATTTTTGG
CTTGCCGCATGGGGAGCTGAAGGCCACCTTTGGGCCCTGATGTGCCACCA
AGGACCTCGGGTGCCAGTGGTCCATCTCTTCTGGACGGCAACCAGGCGGT
CCGGGTGCGCTGATGGAGTGCGTTAAAGCGCCACCAAGCTGTGGGCCAAA
GCCCATGGG
UFO10026.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfk-RC | 3188 | CG4001-RC | 560..1648 | 9..1103 | 4930 | 97.5 | Plus |
| Pfk-RB | 3508 | CG4001-RB | 560..1648 | 9..1103 | 4315 | 93.9 | Plus |
| Pfk-RA | 3217 | CG4001-RA | 634..1677 | 54..1103 | 4090 | 93.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10112612..10112960 | 151..499 | 1745 | 100 | Plus |
| 2R | 25286936 | 2R | 10114910..10115104 | 755..947 | 830 | 97.4 | Plus |
| 2R | 25286936 | 2R | 10113015..10113170 | 497..652 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 10111429..10111577 | 9..157 | 745 | 100 | Plus |
| 2R | 25286936 | 2R | 10114125..10114235 | 652..762 | 525 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:36:50 has no hits.
UFO10026.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:22 Download gff for
UFO10026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RC | 533..1613 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:51 Download gff for
UFO10026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RC | 560..1640 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:19 Download gff for
UFO10026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RC | 560..1640 | 9..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:19 Download gff for
UFO10026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10114917..10115105 | 762..949 | 97 | -> | Plus |
| 2R | 10111429..10111575 | 9..155 | 100 | -> | Plus |
| 2R | 10112617..10112958 | 156..497 | 100 | -> | Plus |
| 2R | 10113016..10113170 | 498..652 | 100 | -> | Plus |
| 2R | 10114126..10114234 | 653..761 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:51 Download gff for
UFO10026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5998934..5999080 | 9..155 | 100 | -> | Plus |
| arm_2R | 6000122..6000463 | 156..497 | 100 | -> | Plus |
| arm_2R | 6000521..6000675 | 498..652 | 100 | -> | Plus |
| arm_2R | 6001631..6001739 | 653..761 | 98 | -> | Plus |
| arm_2R | 6002422..6002610 | 762..949 | 97 | -> | Plus |
