UFO10027.5prime Sequence
1075 bp (934 high quality bases) assembled on 2011-10-19
> UFO10027.5prime
CAGTCGACATGCGAGCAAAGGCACCACACGATCGCGACTTTGGTCACAGT
GGACGTGGCGGTCGCGGAGGCGATCGAGGCGGCGATGATCGGCGAGGAGG
CGGCGGCGGAGGCAATCGCTTCGGTGGCGGCGGTGGCGGTGGCGATTACC
ACGGCATAAGGAATGGACGCGTCGAGAAGCGACGCGATGACCGCGGAGGC
GGCAACCGATTTGGAGGTGGTGGTGGATTCGGGGATCGCCGAGGAGGAGG
TGGCGGCGGCAGCCAAGACCTCCCCATGCGTCCGGTCGACTTCTCCAACC
TGGCTCCCTTCAAGAAGAACTTTTACCAGGAGCACCCTAACGTAGCAAAC
CGATCGCCCTACGAAGTTCAGAGGTATCGCGAAGAGCAGGAGATCACCGT
GCGCGGACAGGTGCCGAACCCCATCCAGGACTTCTCCGAGGTCCATCTGC
CCGACTACGTCATGAAGGAGATCCGCCGACAGGGCTACAAGGCCCCCACC
GCTATCCAAGCGCAGGGCTGGCCTATCGCCATGAGTGGCTCGAACTTCGT
CGGCATTGCCAAGACGGGATCCGGAAAGACCCTGGGCTAGATCCTGCCCG
CTATTGTCCACATCAACAACCAGCAGCCGCTGCAGAGGGGCGACGGACCT
ATCGCCCTCGTGCTGGCCCCCACTCGGGAGCTGGCCCAACAGATCCAGCA
GGTGGCCACCGAATTCGGTTCCTCGTCGTATGTTCGCAACACCTGCGTCT
TCGGCGGCGCCCCGAAGGCGGCCAAATGCGGGATCTGCAGCGCGGCTGCG
AGATCGTCATTGCCACACCCGGACGTCTTATTGATTTCCTCTCCGCCGGC
TCTACTAACCTGAAAGCGTTGCACCTACTTGGTGCTGGGACGAGGCCGAT
CGCATGTTAGACATGGGCTTCGAGCTGCAGATCAAGAACGATCCGTCTCA
CAGATCCCGGCCCGACCGACAGACGCTCATGGTGGAGCCGCTACTTGGGC
CTGGGAGGTCAAGCAGCTTGCCGAGGAACTTTTTTGGGCAACTACTTCCT
GAATCAGCATTGATCGCCTGGAACT
UFO10027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-RI | 3153 | CG10279-RI | 679..1730 | 8..1067 | 4845 | 97.8 | Plus |
| Rm62-RE | 3160 | CG10279-RE | 691..1742 | 8..1067 | 4845 | 97.8 | Plus |
| Rm62-RH | 2760 | CG10279-RH | 296..1342 | 13..1067 | 4790 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6004105..6005126 | 1049..20 | 4540 | 98.1 | Minus |
| 3L | 28110227 | 3L | 6954202..6954628 | 934..507 | 345 | 74.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:36:59 has no hits.
UFO10027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:23 Download gff for
UFO10027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RI | 673..1730 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:55 Download gff for
UFO10027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RE | 685..1742 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:22 Download gff for
UFO10027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RE | 685..1742 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:22 Download gff for
UFO10027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6004080..6005126 | 20..1075 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:55 Download gff for
UFO10027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1829802..1830848 | 20..1075 | 97 | <- | Minus |
