UFO10028.5prime Sequence
1086 bp (953 high quality bases) assembled on 2011-10-19
> UFO10028.5prime
CAGTCGACATGAGCAGCGGCACCGCCGGCTGCAAGCGCGCGCACAGCATC
GAGGTTGAGCAGCCGCTGACGTCGGAGCGCCTGGAGCACAGCCTGCTGTT
GGTCAAGGGACGCCTGGTGCCCAAGTGTTCCACGGCGCGTCAACTGAAGG
CGATCCTCGATCTGCCCGAGCACCTGTCCCAGGAGCAGCTCACCCAGCTG
TCGGCCGGCGGCGAGTTTAAGCTCCTATTCGACTTGGAACAAGCGAATCG
CGAGGAGGAGGAGGAGGAGAGCGCCTGCCTCCTGGAGTTGCGATCCTGCA
CGGCCACCCGAACGATTAGCTTCAGTTACCGGCCCCGCCGCAGCTCCTAC
CGGGTGCAGCCGCTCTACCTGCTCTGTCAGGACGAGGAGAAGACGCTGGC
GCAGCAGCACGAGGTGCACTCCCTCATCGATCTTAATTTGCGGCTGGTGC
AGTCCATCTACGCGCACAAACTGCACGCGGCGGGCTTTCCCAACCGCACC
TTCACGCTCAACGGCAAGTGCTGCGCCTTCCGCAGCCAGTTGACCCGGAA
ACAGGCGCTGGCGAAGAGCGAGGACGAGCTGTGGCAGCATTTCGCCGGCG
AGATTATCGCCTGTCCGCAGTGGGGCCACCAGTTGCTCCTCAAGTTCGTC
GCCTTTGTGGGCTGCACGCGCTACGACGGCGACGCAGTGGTGGCCAGCGG
TGACTCCTCGTACGCCAACATCCGGCGGCATCTCAAGGGACACGCAGCAC
TCGGTGGCGGCGGCTTGGCGCTCTTTGGTAGTGCCCACTTCTACGCGTGG
CCCACGAGCTTCGCGGAGATCGGCGACTGTGTGCGCAGCGCCCAGCGGGT
GGACATCGCCCGCCTGCCGGACGAGAGCAACTATCGGCGGACGTACGGCG
GCGTCTATGCCAGCACTTTGGGCGCCGTGTGCCACGACTGGGTCACTGCT
TCGATCTGGTCCCACACAGCGGAGGGGTGTGATGGGCCAGGCTTCGACTA
CTTGAATCGCGTGTGAACGGTGGACAGCCCACGGGAGCATTGCTGACGAT
GTGACGCCCGTCACAGGGGCCCTCCTGCCAATACTA
UFO10028.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6299-RB | 2551 | CG6299-RB | 107..1139 | 9..1041 | 4895 | 98.6 | Plus |
| CG6294-RB | 2306 | CG6294-RB | 107..1139 | 9..1041 | 4895 | 98.6 | Plus |
| CG6294-RA | 2551 | CG6294-RA | 107..1139 | 9..1041 | 4895 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15462828..15463844 | 9..1025 | 4765 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:37:06 has no hits.
UFO10028.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:23 Download gff for
UFO10028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6299-RB | 117..1149 | 9..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:59 Download gff for
UFO10028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6294-RA | 107..1139 | 9..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:25 Download gff for
UFO10028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6294-RA | 107..1139 | 9..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:25 Download gff for
UFO10028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15462828..15463860 | 9..1041 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:59 Download gff for
UFO10028.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15356861..15357893 | 9..1041 | 98 | | Plus |
