UFO10029.5prime Sequence
1085 bp (970 high quality bases) assembled on 2011-10-19
> UFO10029.5prime
CAGTCGACATGCCCATTTGCAAAAGTTCACCGGGTACGGCGAGCAACAAA
ACAGCCACGGATATATCCGCCGACCACGTGACGGAAGCGGCCCAGGTGAA
GCGGACGCGGGAGCAGGCCTACTTCAACTCCTACGACTTCGATGCAATCG
AGGTGCTGCCCTACGAGGAGGAGGACGACGAGGCGGGAGGCACCAGTCAC
AGCAGGAGCAGGAGCAGGAGCCAGAGCCGTAGCCAAAGTCGTTGCGGAAG
CAGCAGCAGCCGGAGCAGCAGCACCAGGAGCTACTCCGCAGCCAAGGAGC
CCGTTGCCGGCCACAAGTTTGCCTATCTGCAACGCCTGGGCGCCTTTTTT
GCTCGCAACGGAGGTGGAGCAGGCGAATCGGGATCGGGAGAAGCTGCTGG
TATAGCTGCTCCAAGTGGAGGAGGTGCATCCAACGCGGCGCCCAAGGGAA
GCAGCGAAAATTTTCTACTGCCACGAGCCATGCTTAAATATCAAAGCACG
GCGACAGCATCAGCCTCGCCATCGTCCACATCCACGGCAGCGGTTGCAAT
GCCACTGAAGAATGGACTGGCCAATGGAATGGGGAATGCAATTGGTCACG
ACCTACAGCTGGAGGCGACCGGCAGCGCGGGGGAGCGCAGCAAGAAGTGC
TCGATTGCGTCCAATGTCAGCAGCACGCATTCCACGGATTCCGGACTGCC
AGTCGCAGCAGCAGCAGTATCAGCATCAGCATCAGCTTCAGCGGCAGCAT
CTGCGACTGCAGCAACATCTGCTGCAGCAGCGGCAGCAGCAGCACAGGCG
GCGCGTGGCGGAGGAGGTGATGGTGGCGGCTCACACTATTCGACGGACAA
AAGCGGCTCGTCCGGTTATTACAGCTCCAATGTGTGCTCCCACTTACTCG
CTGGACGAGCACATTTTATTGCGAACCAGTCATCGATGTCCAGGAGAGGA
TCAGGAGTGGTGGCCGCCAGACAGCGGCAAGACACGCTTCAGCTACCAAC
GGAAAGGTGGGGCGCTTCCGCAGGAGTGCATCGATAGAACCCACAGAGGC
TCAATCGGGAAAGATGTGTCGCATGTAAGAGTTCA
UFO10029.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30377-RB | 4078 | CG30377-RB | 912..1969 | 8..1067 | 4810 | 97.7 | Plus |
| CG30377-RA | 3414 | CG30377-RA | 248..1305 | 8..1067 | 4810 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7900952..7901440 | 8..496 | 2445 | 100 | Plus |
| 2R | 25286936 | 2R | 7905441..7905923 | 495..980 | 2220 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:37:14 has no hits.
UFO10029.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:24 Download gff for
UFO10029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30377-RA | 190..1226 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:03 Download gff for
UFO10029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30377-RA | 240..1276 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:28 Download gff for
UFO10029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30377-RA | 240..1276 | 1..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:28 Download gff for
UFO10029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7900944..7901440 | 1..496 | 99 | -> | Plus |
| 2R | 7905443..7905982 | 497..1038 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:03 Download gff for
UFO10029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3788449..3788945 | 1..496 | 99 | -> | Plus |
| arm_2R | 3792948..3793487 | 497..1038 | 96 | | Plus |
