UFO10030.5prime Sequence
1092 bp (994 high quality bases) assembled on 2011-10-19
> UFO10030.5prime
CAGTCGACATGTTGCAATCAACGGTTCCGTCATACCACCATCCCCATCCG
CATCACGGCCACCCTCATGCTCATCCCCATAGCCACCACCATGCGTCGAT
GCACCATGCCCATGCCCACCATGCTGCCGCTGCAGCTGCCGCCCACCAGC
GTGCGGTGCAGCAGGCCAACTATGGTGGTGGAGTCGGCGTGGGCGTTGGC
GTCGGTGTGGGCGTGGGCAGTGGCACGGGCAGCGCCTTCCAGAGGCAGCC
AGCTGCCGGCGGATTCCATCATGGCCATCATCAGGGCCGCATGCCGCGTC
TGAATCGCAGCGTTTCGATGGAGCGTCTTCAGGACTTTGCCACCTACTTC
AGTCCCATTCCGAGCATGGTGGGCGGGGTATCCGATATGTCACCGTATCC
GCACCACTATCCCGGCTACTCCTATCAGGCGAGTCCCTCGAACGGAGCAC
CCGGCACTCCTGGCCAGCATGGTCAGTATGGCAGTGGCGCCAATGCTACC
TTGCAGCCACCACCACCACCGCCGCCGCCGCATCACGCTGCCATGTTGCA
TCACCCGAATGCCGCCTTGGGCGACATCTGCCCCACCGGGCAGCCCCACT
ACGGGCACAATCTGGGATCGGCTGTCACCTCCAGCATGCATCTGACCAAC
TCCAGTCACGAGGCCGATGGAGCCGCCGCTGCTGCTGCCGCCTACAAAGT
GGAGCACGATTTGATGTACTACGGGAACACCTCATCGGACATTAACCAGA
CGGATGGCTTTATTAACTCCATTTTTACCGACGAGGATCTGCACTTGATG
GACATGAATGAGAGCTTCTGTCGCATGGTTGACAACAGCACTAGCAACAA
CTCCTCGGTTCTGGGCTTGCCCAGCAGTGGACATGTAAGCAACGGCTCCG
GTAGCTCGGCACAACTTGGGGGCGGGAAATCCGCACGGCTAACCAGGACA
ACGGAGCGTCGGCGGGCGTTGGCTCGAATGAACGGGATCAGCTGGTGGGG
CGCCTGGGAGCTACGGAATGACGACGAACTTTGGCAAGCGGGCGGTGCAA
GGAGCCAAAGGGCGGTGCGGAATCGCCTGGAACGCATTCAGC
UFO10030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnc-RN | 4746 | CG43286-RN | 1293..2360 | 5..1081 | 4785 | 97.2 | Plus |
| cnc-RM | 4737 | CG43286-RM | 1284..2351 | 5..1081 | 4785 | 97.2 | Plus |
| cnc-RO | 6701 | CG43286-RO | 2416..3483 | 5..1081 | 4785 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23191841..23192284 | 725..282 | 2175 | 99.3 | Minus |
| 3R | 32079331 | 3R | 23197286..23197566 | 285..5 | 1375 | 99.3 | Minus |
| 3R | 32079331 | 3R | 23188970..23189129 | 975..814 | 635 | 95.7 | Minus |
| 3R | 32079331 | 3R | 23191695..23191784 | 814..725 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:37:26 has no hits.
UFO10030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:25 Download gff for
UFO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RB | 840..1861 | 1..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:11 Download gff for
UFO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RO | 2411..3432 | 1..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:33 Download gff for
UFO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RO | 2411..3432 | 1..1027 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:33 Download gff for
UFO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23188922..23189129 | 814..1027 | 92 | <- | Minus |
| 3R | 23191696..23191783 | 726..813 | 100 | <- | Minus |
| 3R | 23191841..23192281 | 285..725 | 99 | <- | Minus |
| 3R | 23197287..23197569 | 1..284 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:11 Download gff for
UFO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19014644..19014851 | 814..1027 | 92 | <- | Minus |
| arm_3R | 19017418..19017505 | 726..813 | 100 | <- | Minus |
| arm_3R | 19017563..19018003 | 285..725 | 99 | <- | Minus |
| arm_3R | 19023009..19023291 | 1..284 | 98 | | Minus |
