UFO10031.5prime Sequence
1078 bp (957 high quality bases) assembled on 2011-10-19
> UFO10031.5prime
CAGTCGACATGAGCGAAGGGGTACCAGCGTCGCCCGTGGCCATTGGCGAA
CTCAAGTACGAGGATGTGTCGCAGCTAAATTTTTCCAAACTGTACTCGCC
CAAGATGAAAAGCGTATACTGGCGCTACTTTGGATTCCCCTCGAACGACA
ATAATGAGGTGATTACCAAACAGAATGTGGTCTGCATTAAGTGTCACAAG
GTGCTGACCAACCATGGCAACACCACCAATTTGCGTGCGCATCTCCAGCA
CCGACACAAGGATCTGTTCAAGGAGCTGTGCCAGGAGCACGACATCCATG
TGCCGCCGCGCAAGACGCCGCGTAATGTATCCCATCCACCGCTGTCCAAG
CGGAATGTTTCCTCGCGGCGGGTCAAACTGGAGTTCATTAATAACCGGAA
CCACGATAACGCTTCCGATGATGAACTGGACGAAGCAGCCGTGGCAACTG
CGGCCATGCAGGCGGAGGAGGACGCCTCCTCGCAAACCATGCTGTACGAG
ACCATGGTGCCCTTCACCTACGACGAGGCCGAAAATCTGGTAGAGGAGGA
GGAGCGCCTAGTTATGGAACCAAAGTACGGACGCAGACGCAAAGTGGCCA
CTCCATCGAGTGCCCTGATGCACGGGCGTGTCATCAAGCACGAGGAAGGC
GGCTATGCCGCCGTGGCGAACATCGCCAATCTGGCCGAAGCCCTTACGGA
CATTGTGATTAAGATTTGCGCAATGTGGATTCTCTGTACGATGCCGGTTT
TGGTGAATTCCTGCGTCAAGTCCTAGCAATTCGGCAGCCATGCCCGAGCC
ACACAAGATCGACTCTTTGATCAATGAGATGCACGCCTCCAAGTTTCTGG
AGATTGGCGAAATCACGCGCGATTTCATGTCCGAGAAGCCCTTCTCTCTC
GCCTTTGAGATGTGGGTGATTGTGAACAGCGCGCCTCCTTAGCATCTTCC
ATCACTTTCTGGACGAGGAGACGCACTCAGTTCCGCGTATGCTGTATGCC
ACCGTGAGTCCAACGACTAACTCGTCTTGACGATCTGCTGACGACTCTAA
TGCATTGCAACTGCATCTACCTACGACA
UFO10031.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dref-RB | 2739 | CG5838-RB | 345..1384 | 9..1042 | 4885 | 98.5 | Plus |
| Dref-RA | 2872 | CG5838-RA | 345..1384 | 9..1042 | 4885 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9965846..9966885 | 1042..9 | 4735 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:37:30 has no hits.
UFO10031.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:25 Download gff for
UFO10031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dref-RA | 563..1619 | 1..1049 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:14 Download gff for
UFO10031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dref-RA | 337..1393 | 1..1049 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:35 Download gff for
UFO10031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dref-RA | 337..1393 | 1..1049 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:35 Download gff for
UFO10031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9965840..9966892 | 1..1046 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:14 Download gff for
UFO10031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9965840..9966892 | 1..1046 | 97 | | Minus |
