UFO10034.5prime Sequence
1107 bp (994 high quality bases) assembled on 2011-10-19
> UFO10034.5prime
CAGTCGACATGGCCCAGCTGAAGAATGTGGGCCAAGCAGGTCAACAGGCC
GTTCTTGTTGTTGGCCCCATGCTTGCCTCGGCCATGTTGCTCATGGGGCT
GATATTCGCGCTGCTGGGGATCAAGTTCTTCGGCTTCCGGCGGCGACTGA
CTTTCGAGCGATCGCAGGTGCAGCGGCAACAGCAGAATCAGCAGCAGCAA
CAACCGCCGCCACGTTACGCAGCTTTCGAATCGCAGGTTAACGGCACCGA
TACTGCTGTCCATGGAGTGTTCCGACGTCGCAATCTCGAGGAATTCGAAA
GCCCATGGCCATCGGCATCAGCAACGACAGGGAACAACTTCATCAGTGGC
AGTGTTCCAAATCTGCAACTATATGGCGCCAGCCCAAGACAGCCCAAATC
CACGGAAGAATCACCAGTTTCCTATCGAGAGAAGTCGGAGGCACAACGAC
TGGAGGTGCACAGTGAGCACTATGAATTCTACACCGCTCCACCTACCCGC
AAGCCACCTTCTCCGCCACTACAATCAGAAGTACTAGCTGAAACTGCCTC
GGTAGTTTCACTACCTAAGATACCAGAATCCATCCCTGCTCCACCTCCCA
GGACCATGAGAGGAGCTGCTGCATCCAAGCCTTCAGGACCTGCAGCTTCT
GTCGACACAGCTCCCGAGCCTCCTAGCGAACTGGGAATGCCCAACTTCGA
TCACTTTGCTGAAAAGTACGAGTTGTTTAGTGTAAAACCAACGACTGCGC
CCACTAGACCAACACAGTTGCGAAGCAAGAACAGCGGCCGCTATGTGAAG
TTCGAGCCAGTTGATGATGTGCCGGAATTCTCACTCCTGAGGATCCCGTT
CCCGGAGTTACTAACTCCAGATGATGGTTTGGAGGAGCGATGTCAGTTAC
CGCTGTGGTTCATAGGGAGCCATACCCAAGGAAGAAACGGAATCGAAAGA
TGACCGCAAGCACCAATGATACCGATCCGTTTGGGGGGACCAGCATAACA
GACCTCAGCTTTTTGTCTGGAAATCATAGCAGGAAGTCCGAAGCGAGCGA
CCTCCTAGTATAGGCCCCACTCGAATGCCTATTTGAAAACTTTGATTACC
AAGGTTG
UFO10034.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14131-RA | 2532 | CG14131-RA | 147..1253 | 6..1101 | 4945 | 97.3 | Plus |
| CG14131-RB | 2529 | CG14131-RB | 147..1250 | 6..1101 | 4890 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11778422..11779136 | 328..1039 | 3085 | 97.6 | Plus |
| 3L | 28110227 | 3L | 11777304..11777507 | 35..238 | 1020 | 100 | Plus |
| 3L | 28110227 | 3L | 11778215..11778312 | 234..331 | 490 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1087..1145 | 164..223 | 162 | 76.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2602..2662 | 157..217 | 161 | 73.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1151 | 157..204 | 150 | 79.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6821 | 170..213 | 148 | 81.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6851 | 164..210 | 145 | 78.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1148 | 164..213 | 142 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6881..6923 | 165..207 | 134 | 79.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2377..2424 | 157..204 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1575 | 171..207 | 131 | 83.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2373 | 164..207 | 130 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6770 | 170..204 | 130 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6791 | 170..204 | 130 | 85.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1513..1551 | 166..204 | 123 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2438..2472 | 170..204 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2480..2514 | 170..204 | 121 | 82.9 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1056 | 171..255 | 119 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2773..2826 | 157..210 | 117 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2352 | 175..223 | 116 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6824 | 164..204 | 115 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2812..2868 | 157..213 | 114 | 66.7 | Plus |
UFO10034.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:20 Download gff for
UFO10034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14131-RA | 141..1260 | 1..1107 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:38 Download gff for
UFO10034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14131-RA | 141..1260 | 1..1107 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:10 Download gff for
UFO10034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14131-RA | 141..1260 | 1..1107 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:10 Download gff for
UFO10034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11777306..11777505 | 37..236 | 100 | -> | Plus |
| 3L | 11778218..11778311 | 237..330 | 100 | -> | Plus |
| 3L | 11778425..11779213 | 331..1107 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:38 Download gff for
UFO10034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11770406..11770605 | 37..236 | 100 | -> | Plus |
| arm_3L | 11771318..11771411 | 237..330 | 100 | -> | Plus |
| arm_3L | 11771525..11772313 | 331..1107 | 95 | | Plus |
