UFO10036.5prime Sequence
1082 bp (936 high quality bases) assembled on 2011-10-19
> UFO10036.5prime
CAGTCGACATGACGGAATCGGCTAACTTTCTATTCGACTTGGTCATCACC
AATCTGAATATTTTTGGCGTAACGATTGACGAACCCGCCAAACTCCTGGT
GGAAACCAAGGTTGCCGGAAAATCAGTGAAGGTAACGTCCAGCCGAATCA
ATGTCGACCAGTTTGTGGCCGGCAGGGAGTTTGAGCTCCCAATGGAAGCA
TCGACATTGCGTCAAAGTCTGGAGGAGAAGGGTTTGACTTTGGCGGGTGT
TTACCAGGGATCAACTCTTGGCAAGGCCACGGGGAACTTCCCTGTGGAGT
TTCTTGACAAGATCAGCCCCACGATGAACGATCTGGTGCACGAAGATACA
CTCGATTTGGTTCGTCGAGTTGATGTAGTTGGAACGGTGAGCGTTCTAAT
CCGCTTGACCGTAAAGTGCGAGGAGCACCCAGAGCAGAAGCCTTCAAGGC
AAAGTCTTTCCCGAACCAGCAAATCATCGATGATACTACCGAAGAAAGAG
AAAAGCGGACGAGTCAGTTGTGCTAGCCAGGGCCCGACCTTCAATCCTCA
GAATGTGATGTTTCTCATCGGCGATCCTGATCCTTTACTTCGAATTCCCT
CGGAGCCGTGTTCTGAACTTCTATCCGAAATAGGAGATGAAACGCCTGAA
GCTGGACTTGCAGCGCTACAAAAGCTTGGAAAATCGTCGAGCAATCTTTC
CAGATGATGACCGCTGTCCCAAGCAAAAACCCTCATTTATGCAACTTAAA
AAGCTCACCGAGGAGTATTCTAATATCATTGACTCTGTGACAAGAAGGTC
AAAGAAATGGAACCGCAATCGAGCTCGTTGGTTCCTACGGAGCCACCTTC
CGATGCGAATGTCATAACTCCATTTTACACACCGCGGTCTCTAAGTCTTG
CCTCCCGGTGAAATTCTGGCATACTTGTTTTCTGTTAGATCCGTGCTTAT
TAACATGGGCGGTGAAACCTATACGGTTCTGTCCTGTCTTGCTTGGTGCC
TCCATGTCGTGAATGCAAATTATGCACCATGCCCTTCAATGTGCAATTAC
TTAAGGCACAGTCTCCTCATATACTCCAAAGA
UFO10036.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31533-RA | 2704 | CG31533-RA | 141..1162 | 9..1041 | 4725 | 98.1 | Plus |
| CG31327-RA | 2719 | CG31327-RA | 639..854 | 530..746 | 310 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14156275..14157291 | 1035..9 | 4400 | 97.7 | Minus |
| 3R | 32079331 | 3R | 14159425..14159640 | 746..530 | 285 | 76.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:36:43 has no hits.
UFO10036.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:21 Download gff for
UFO10036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31533-RA | 141..1173 | 9..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:47 Download gff for
UFO10036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31533-RA | 141..1173 | 9..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:16 Download gff for
UFO10036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31533-RA | 141..1173 | 9..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:16 Download gff for
UFO10036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14156259..14157291 | 9..1055 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:47 Download gff for
UFO10036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9981981..9983013 | 9..1055 | 97 | | Minus |
