UFO10039.5prime Sequence
1098 bp (1001 high quality bases) assembled on 2011-10-19
> UFO10039.5prime
CAGTCGACATGTTTTCTTACTGGACCAAACAGAATATATCAAGCTCAGTA
GATGGAAAAAAGATGGACAAAGTTTCTACCATGAGAAAAAAAAATTCAAC
AAAAGTTAAAATGGAGAAAAAAGAAACAGTTGTACCGATTACAGAAATGC
GTGCTCTGGAATTTCAAGATTTCCTTAAGCGGGTACAGACGTTACAAATG
TCGCACAACGAAAGCCGCGATTTAGTCAATGGACCTAATATCTGCAGTTC
CATGGATATTGAAGTCGGCGAAGAACCTCCTACGACATCTTTTGCCGATA
ACATAGATAAAGCGTGTCCTTTACCAGTGCTGCGATCATCTGATTGTGAT
TGTGTGCCACTTTGTATGACAAATATTCGTGTATCAGTTGGTATTGACAA
AGACTTAGAAATGATTCTTGAAATGGATCCGAGTATTGTAGATTTGGGTG
ATATTAGCATTGATGAAACTGCAGAACCGCGCATAGTGGGCTTACCTCCA
CTTTCGGGTGGACCGACATTTAAAACTGCTACTCCCACTTCACGAACACA
ACTAAAACTGCAGCTACAACGTGAACAACAGCAACAAATGATGATACAAC
AACAGACATTAGACACTGCTATGGACCCAAAAATGCATCTATTGTTTGGC
AGTGGGCAGGGGCTTATGGAATCGGAATTCATTGACAGCGGTAGTACCAG
TGCTTGTGGCAGCGGGTCATCCAGTTTAGAACAAATGTCACAGTTAGTGC
AAATGGACAATTTAATTGATTCGTCAAGTGGAGCCAAGCTTAAAGTTCCT
CTTCAAAGTATCGGAGTAGATGTGCCACCCCAAGTGCTGCAGGTCAGTAC
AGTGCTTGAAAACCCTACAGGTATCACGTTATCCAAAGCAAAAGAATCAA
GTGGAGGCATATCTCAGCGAATCCTTTAAGCCGTCTATTGTGGGGCAGTC
ATACGAGCCGAATAAATTAGCAAATATTCTGCGTCACGGGAAATCTTCAA
ATTCATCTTTACAGAAAGTTATTTGGCGATCCATGGGAGCGAAAACCGAT
TTGGATGCGATCGGCTGTGGAGTGCTAAGAAATTAGCTCGATGACGCC
UFO10039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mitf-RC | 3226 | CG43369-RC | 54..1129 | 9..1078 | 4975 | 98.2 | Plus |
| Mitf-RB | 3009 | CG43369-RB | 319..891 | 512..1078 | 2460 | 96.7 | Plus |
| Mitf-RA | 4032 | CG43369-RA | 325..897 | 512..1078 | 2460 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1219093..1219595 | 9..511 | 2515 | 100 | Plus |
| 4 | 1348131 | 4 | 1219693..1220026 | 511..844 | 1670 | 100 | Plus |
| 4 | 1348131 | 4 | 1220073..1220192 | 840..958 | 380 | 93.4 | Plus |
| 4 | 1348131 | 4 | 1220263..1220364 | 964..1061 | 205 | 91.3 | Plus |
Blast to na_te.dros performed 2014-11-27 00:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6847 | 524..605 | 151 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6814 | 512..605 | 130 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2468..2531 | 548..612 | 124 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2420..2476 | 542..604 | 121 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2425 | 522..604 | 120 | 61.9 | Plus |
UFO10039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:31 Download gff for
UFO10039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mitf-RA | 319..899 | 512..1085 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:56 Download gff for
UFO10039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mitf-RC | 49..1137 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:05 Download gff for
UFO10039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mitf-RC | 49..1137 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:05 Download gff for
UFO10039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1219088..1219595 | 1..511 | 99 | -> | Plus |
| 4 | 1219694..1220024 | 512..842 | 100 | -> | Plus |
| 4 | 1220076..1220195 | 843..961 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:56 Download gff for
UFO10039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1222814..1223321 | 1..511 | 99 | -> | Plus |
| arm_4 | 1223420..1223750 | 512..842 | 100 | -> | Plus |
| arm_4 | 1223802..1223921 | 843..961 | 93 | -> | Plus |
