UFO10040.5prime Sequence
1086 bp (988 high quality bases) assembled on 2011-10-19
> UFO10040.5prime
CAGTCGACATGAATCGTATATCGAATCCTTCGCGTCGCCAGGCGAGTGAC
GTCTTCATTGGTGACCCCTTCAAAATTCACTCATACAACTTTCGCTATGC
CGACAAGCCATTTTATCCGGTCCAGAACTATCAAAGACCTCCGGCGGCAC
CGACTCCGCCGGCACTGGTGAAGAAGGCCTCCTTCCAGACCTTCTACCAC
AATCCCAGATTCAGCCAGGATCCCGAGTACATTCCGGCAAAAAAGAGTCC
ACAAACTAGCTCCTATAGGCGTCGCCTTTTGCTGGAATCTATGGATATGC
CCTTGGGATCTACGGTGACAACGCCGGAGAGACAGAGTGTACCGGTGGCT
CCGCAGACGAAGCGTTCTCCCACAGCCACGGATTCGCCGCTCCTCAGGAC
ATGCTGTCAAAGTGTGCGCTACGAGGCTATGAGACGGGGTCCAAGCAACA
CGACTTTGTGCCAGAGTACCACGAATCTCATACGATCAGCTGGCGGCGGT
GTGCCTTCTACTTCAACCACCACCTTCTCCATGGACTCCAACGCCCATCT
GCAGAACAGAAGAAGCGGCTGCGGTATCAGCATCGACATCTGCAGTGTGG
GTTCGCAATCTGAGGTGGACAACAATGTGAGCATCCAGATCGCAACGGAT
GCCTATCTGCTGAACAATACGGACAAGGTGAGGACCAAGTCCAAACCGGT
GCGCTGTACGCCCAGATCCAGCGGCACCTTTGGCATCGACAAGCGACTGT
CCAAGTTCAATGTGAGCGAGACGAAACCTCGGACGAGTCCGGAATGGGAG
CTCCGGCAGAGAGAGAAGCACGAGAAGCGGAGCGCCAACAAAAACGGGAG
CGGGATCGACAGTTGTTGGAGGACCGACGCTTGAGCAGAGAGGGAACTTC
AGGAGGAGCGAGAGCGTGCCCGCCAGCGGGAGCGAGATCGTGAGCAGCTT
CGCCAGTTGAGCGCATGCGAGATGAGGAGCGACTCTAGAGTTGAGTGGAG
CGGCGGAGAGCAGCGATGCGGACTAAGACGGGAAACCACGCAAGAGAATC
GAGCGGCTGGTTGCCTCAGGACCAGCCGTCGGAGCC
UFO10040.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13330-RA | 2129 | CG13330-RA | 78..1142 | 9..1059 | 4845 | 98 | Plus |
| Vmat-RE | 7325 | CG33528-RE | 3992..5040 | 1059..25 | 4765 | 98 | Minus |
| Vmat-RF | 7141 | CG33528-RF | 3808..4856 | 1059..25 | 4765 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13515417..13516381 | 25..985 | 4610 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:38:44 has no hits.
UFO10040.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:31 Download gff for
UFO10040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13330-RA | 69..1084 | 1..1010 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:01 Download gff for
UFO10040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13330-RA | 69..1084 | 1..1010 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:09 Download gff for
UFO10040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13330-RA | 69..1084 | 1..1010 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:09 Download gff for
UFO10040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13515417..13516407 | 25..1010 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:01 Download gff for
UFO10040.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9402922..9403912 | 25..1010 | 98 | | Plus |
