UFO10041.5prime Sequence
1129 bp (950 high quality bases) assembled on 2011-10-19
> UFO10041.5prime
CAGTCGACATGGATGATGATGCAGAATACCAGAAGCTCCGGCGAAACATG
CAGGGAGCTCAAGGATCGAGAGAAGGACATCCAGGATCAAATGATGGCAT
CAGCACAGTAATCTACAGCGCGGAAGGAGAAGAGCTTACCATAAATTGTG
AGGCCGAATCCGAGTCATCCGGCCAGCGAGATCAGTGGAGCAGGGGAGTG
GAGTTCCTCTTCTCCTGCATCGCCCTATCCGTTGGCCTTGGCAATGTCTG
GCGATTTCCGTTCATTGCTCTGGAGAATGGCGGTGGCGCCTTTCTCATAC
CCTACGTGATTGTGCTCCTGCTGATTGGCAGACCGGTTTACTATCTGGAG
GTCATCATTGGTCAGTTCTCGAGCCGTGGTTGCATCAGAGCCTTCGATAT
GGCACCTATAATGAGGGGTATTGCCTATGGTCAGGTGTATTCCACCGCCT
TGGCCACCACCTACTACGCCTGCATTATGGCCTTGACCATCAGATATTTG
GTGGCTAGTTTCAGTGAAGTCCTGCCCTGGACATATTGCCTCGTGGAATG
GGGCAAAAGTTGCGTGGCGACGGGAGCCACAGCTGCCAATGACTCATCCA
TTGTGCAGGGGGTTTCCTCCGCCGAGCTGTTTTTCACGCAAACAGTTCTG
AGGGAGCCCGAATCGCTGGACGATAATGGCCTGGGTACTCCCAGTTGGGA
TCTGGTCTTGTGTCTCCTGGCCACTTGGGTGATCATCGGCACGATTTTGT
CAAAGGGCATTCGCAGTTCTGGGAAAGCTTCCTATTTCCTGGCCCTGTTT
CCCTATGTGATCATGATCGTACTGCTCATTCGGGCGGTCACTTTAACAGG
TGCCTGGCAAGGAAATTGTGTACTTCCTGAAGCCCCAATGATCACAGCTG
CTCATTCCGCACGTGGTGGTACGCGGCCATCACACGAATGTTCCTCCCCG
CTTGGCTTCTGCTTCCGAACGCTGGTCATGTTACGCCCTCCTTCAATGAT
TTTAACCCAGAATGTGCCACAAAGAAGGTGAATAATAAATCCACTCCACT
ATAGAACTCGCTTACATTCGATTCTGGGCCTGGTTTGCCTCAACTCTTTG
GAAATTCTCTGGCACACCCTGGACCTTGA
UFO10041.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8850-RB | 2260 | CG8850-RB | 186..1260 | 9..1103 | 4735 | 96.5 | Plus |
| CG8850-RA | 2086 | CG8850-RA | 73..1133 | 23..1103 | 4665 | 96.5 | Plus |
| CG42700-RJ | 4712 | CG42700-RJ | 3837..4227 | 1035..638 | 1530 | 93.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12300652..12300938 | 419..133 | 1435 | 100 | Minus |
| 2R | 25286936 | 2R | 12299947..12300310 | 1006..638 | 1385 | 94.9 | Minus |
| 2R | 25286936 | 2R | 12300374..12300595 | 638..417 | 1110 | 100 | Minus |
| 2R | 25286936 | 2R | 12300998..12301123 | 134..9 | 630 | 100 | Minus |
| 2L | 23513712 | 2L | 14848742..14848905 | 349..186 | 325 | 79.9 | Minus |
| 2R | 25286936 | 2R | 18730015..18730155 | 350..210 | 210 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:38:53 has no hits.
UFO10041.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:32 Download gff for
UFO10041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8850-RB | 112..1100 | 9..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:05 Download gff for
UFO10041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8850-RB | 186..1174 | 9..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:12 Download gff for
UFO10041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8850-RB | 186..1174 | 9..1002 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:12 Download gff for
UFO10041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12299951..12300310 | 638..1002 | 95 | <- | Minus |
| 2R | 12300375..12300594 | 418..637 | 100 | <- | Minus |
| 2R | 12300654..12300936 | 135..417 | 100 | <- | Minus |
| 2R | 12300998..12301123 | 9..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:05 Download gff for
UFO10041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8187456..8187815 | 638..1002 | 95 | <- | Minus |
| arm_2R | 8187880..8188099 | 418..637 | 100 | <- | Minus |
| arm_2R | 8188159..8188441 | 135..417 | 100 | <- | Minus |
| arm_2R | 8188503..8188628 | 9..134 | 100 | | Minus |
