UFO10042.5prime Sequence
1108 bp (994 high quality bases) assembled on 2011-10-19
> UFO10042.5prime
CAGTCGACATGAACAGAATCATGCTGTTGGTGGCCTTTGCGGCCGGCGTT
GTGGCTGCTGGAAGGATAACTACGAATCAGGACAGGGTCCAGGGTATTGA
CCGCATGTCCTTGGAGGATCTGCAGCTCCAAAAGTTTATCCTGGATATCG
TCCAGAATATTCGTCAGCCTCTACAGCAGAGTGAGCTCATCAATCTAGAT
GTGGGTCTGATTGCAGACAGTCAGCGTTATCGTGGCGGCATTGATAAGGT
GATGCATAACGTCATCGATCTGGATCGCCAGCGTCGCCTCCTCGACGAGC
ACCAGGTGTACTCCGTGGGTCGTTTGGAGCATGTGCAGCAGCTGCGTGGC
ATATACCGCCTGCTGGCTCGCGCCCAGGACTTTGACACCCTTCGCCGTAA
TGTGGTCTACCTGCGCCGTAACATTAACCCTGTCCTGCTGGTTAATGCCT
TGGCTCTGGCCATTCGCGATCGTGAGGACACTCAAGCTCTGATCGTGCCC
GCTGTCCAGGAGCTGCTCCCCGAACTGTATCTGGATGAGGAAGTGATTCA
GCAGGTGCGCAGCGTCCTAAGGGAACAAACCCAGCGCCCATCGCTCATGG
ACATCGTGGGTATGCGCCAGCGGGCTATGAACCCAGTGATGAGCATCCTG
ATGCCCTGGAGGGAGATCCACATGCAGATGGCTCTAAGGAACAGCAGAAC
ATCCAGAACGTTTTGGGCCAGAAACGCGTCGTTGTCCGTGCCGAGAACCA
GGGACAGGTTGAGGGCACCTCTCTGCTGACGGACGATATTGAGTTGCAGA
ACTTTGTTCAAAATCTCATACAGGAACTTGCCCTTCTGGAGGATGTTACT
CAGTTGGAGCAGAGCCAATTGATCAACAATGATCAACGTGAAGAGCAATG
GGTCGGTCGTCAGCGCGTGCAGTACCAAGAATAACAACCAGGAAAGAGAT
CTGGGTCAGGATGTAAAACACTGGACGCCTACCTCCGTGGTGAGTTCGCG
CCGCTTCTGGGAGCAACAGGATGAATATCATGTCAGAAACATCTATGGGA
AACCAAAGATCGGTTCAGCGTTCTCGCAGGATGACACAACGACCACATGA
TGACATGT
UFO10042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fbp1-RA | 3405 | CG17285-RA | 95..1195 | 9..1104 | 4955 | 97.7 | Plus |
| Fbp1-RD | 3399 | CG17285-RD | 95..1189 | 9..1104 | 4855 | 97.1 | Plus |
| Fbp1-RB | 3465 | CG17285-RB | 245..1255 | 99..1104 | 4505 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14096853..14097809 | 1058..99 | 4300 | 97.7 | Minus |
| 3L | 28110227 | 3L | 14097869..14097959 | 99..9 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:39:01 has no hits.
UFO10042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:33 Download gff for
UFO10042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbp1-RA | 90..1153 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:09 Download gff for
UFO10042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbp1-RA | 87..1150 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:14 Download gff for
UFO10042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fbp1-RA | 87..1150 | 1..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:14 Download gff for
UFO10042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14096881..14097808 | 100..1030 | 98 | <- | Minus |
| 3L | 14097869..14097967 | 1..99 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:09 Download gff for
UFO10042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14089981..14090908 | 100..1030 | 98 | <- | Minus |
| arm_3L | 14090969..14091067 | 1..99 | 96 | | Minus |
