UFO10043.5prime Sequence
1084 bp (947 high quality bases) assembled on 2011-10-19
> UFO10043.5prime
CAGTCGACATGCCGAACCGCCAGGACTACGATGCACAGTCCTCGAAGCAC
TCGGAACAGTCCTTCTTCCGCTTCAACCGGGTGGCCAAAGTACCCCTGGG
GGTGGATGACGATGACAGCTACCTGGACATGTCCGATGAGACGGCCCAGC
TCAAGCCGCGCCAGCAGCACTGGGCCAATAAGATGCAATTCGTCCTGGCC
TGCATAGGATACTCGGTGGGTCTGGGCAACGTCTGGCGTTTTCCGTACAT
GTGCTACAAGAGTGGCGGTGGTGTTTTTCTAGTACCTTATTGCATAATAC
TGTTCATATGCAGCATTCCGCTGCTCTTCATGGAGCTGTCCGTTGGCCAA
TACACCGGTCGAGGACCCATTGGAGCACTGGGTCAACTGTGTCCTCTGTT
CAAGGGAGCCGGACTCGCCAGCGTGGTCGTCTCGTTCCTCATGTCCACCT
ACTATAGTGTCATCATAGGCTACTCCATCTACTACTTCTTTACGTCGTTC
AAAACGGAAATGCCCTGGATCGACTGCAACAACAGGTGGAACACGCCCGA
TTGCTGGGTGCCACAGCGCAAGGGGATTAATGCCAGTGCGCTGGACACAT
CTCGCACTCCATCCGAGGAATTCTTCGAAAACAAGGTCCTGCAGATCAGC
GGTGGCCTGGAGTATCCGGGCATGATGCGCTGGGAGCTATTTGCCTGCCT
GATCTGCGCCTGGCTAATGGTCTACTTCGCCACGTGGAAGTCGATCAAGT
CGTCGGCGAAGTGCGCTACTTCACGGCCACGTTTCCGTTCGTGCTGATCA
TCATCCTGATGGTGCGCGCGGTGACCCTGGATGGAGCTGCTGAGGGTTTG
CGCTTCTTCTTCCGTCCCAAGTGGTCGGAGCTGAAGAAAGCCAATGGGGT
GGATCACGCCCGCATCCCAGAACTTCAACTCGCTGGGCATTAACATTCGG
ATCCATGATCTCCTTTGCCAGCTACAACAAGTACACAACAATATCCTGCA
GAATACCGGTGCAGTGAGTGGCGGTGATGGATCACCAGTCCTCCTGGTCG
CCATCTTTGCCTTCTCAACGCTGGCAAATCTGGG
UFO10043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ine-RA | 2272 | CG15444-RA | 156..1236 | 3..1083 | 4955 | 97.8 | Plus |
| ine-RF | 3436 | CG15444-RF | 1439..2430 | 92..1083 | 4525 | 97.7 | Plus |
| ine-RE | 3458 | CG15444-RE | 1461..2452 | 92..1083 | 4525 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4469164..4469618 | 1083..629 | 1675 | 94.6 | Minus |
| 2L | 23513712 | 2L | 4471978..4472158 | 272..92 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 4470993..4471129 | 406..270 | 685 | 100 | Minus |
| 2L | 23513712 | 2L | 4469832..4469966 | 539..405 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 4469675..4469770 | 628..533 | 465 | 99 | Minus |
| 2L | 23513712 | 2L | 4472949..4473037 | 91..3 | 430 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:39:08 has no hits.
UFO10043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:33 Download gff for
UFO10043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ine-RA | 150..1234 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:13 Download gff for
UFO10043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ine-RA | 152..1236 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:17 Download gff for
UFO10043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ine-RA | 152..1236 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:17 Download gff for
UFO10043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4471980..4472158 | 92..270 | 100 | <- | Minus |
| 2L | 4472949..4473037 | 1..91 | 96 | | Minus |
| 2L | 4469162..4469618 | 629..1084 | 95 | <- | Minus |
| 2L | 4469675..4469767 | 536..628 | 98 | <- | Minus |
| 2L | 4469836..4469965 | 406..535 | 100 | <- | Minus |
| 2L | 4470994..4471128 | 271..405 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:13 Download gff for
UFO10043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4469162..4469618 | 629..1084 | 95 | <- | Minus |
| arm_2L | 4469675..4469767 | 536..628 | 98 | <- | Minus |
| arm_2L | 4469836..4469965 | 406..535 | 100 | <- | Minus |
| arm_2L | 4470994..4471128 | 271..405 | 100 | <- | Minus |
| arm_2L | 4471980..4472158 | 92..270 | 100 | <- | Minus |
| arm_2L | 4472949..4473037 | 1..91 | 96 | | Minus |
