UFO10044.5prime Sequence
1099 bp (989 high quality bases) assembled on 2011-10-19
> UFO10044.5prime
CAGTCGACATGTCGCAGGTGCTTAGCCCCCACAAACAGGGCGTGTCGGAG
GCGGATGCGTTGGACTACACGAACAGCAGCTCGATCATCGAGTTCCTGGC
CAAAGAGCAGGACTGCGGCGGAATACTGAACGATCCGGACCCGGAGTCCA
TATTCCAGGAGGTGAGTCGCCTGTCCGACAGCACAGATATGCGATCCGTG
GATGAATTGCTGCAGGAAGCGGAGCGCCTGATCCAACAGCAGTTGCGTCT
CGGCGGTATTGTTCCAAAACTGGACGCTTCCGGGCCCCCTGCTCCGACCA
AAACCCTCGGAGAAGAAGCTGCCACCGGTGGTGATGGCTCTTCCTCATCC
CCGCAGTCCTCGCCGCATAGCAGCATACGGCTGAATACACGCTATACCCA
TCGCATCGAGCATTCGCCTGCTCCCTTGGCGCCAAAAACCGTCGCAGTCA
ATGGCAGAGTCCGGCCCAGATCCGGTTCCAAATCGTCGGCCTCGCCAACA
TCGGTGCAGACGCCGCTAGAAAGCAGCAATGGATGCGGCTTTGCCGCCTT
CGTGGATAACCTGCCATCGGCGTCGGTCATTTCCGAGGACTCCACGCCCA
AGGACATGGACATGGAGAACCATACGGCGGCCATGGCAAAGCTGCAACTC
CAGCAGCTTCAGGATAATACCGATGACGACGAGGATACGATGGAGGAGAT
CACCGAGGCGGAGGTGGACGCCCCCATATTTTCGCGAGCTGAGGACACTG
GCAAAGAGGTCACGAGTCCGCCTGAAAGGCAGTTTAAGAGTCAAGGGCGT
TCATACATCCAGCCCAGTCAGCCGATTCGACCGATGGCCAGCTACAGCGA
GAAAGCGGTGGGCAGCTCACCCAAGCGCATGGTCAGCACCTTGACCTCAC
CCATCGAGCAGATCGCCAGTAGTGTTTCCGCGGGAGCATGCGCCTAAAGC
TGGAGATCGAGCAACTGCAGAGCGACTCAAGGACACCGAGTAGCGTCTTG
CCTCCGTTCGCCTTCAGAGCGACTCGGCTGTCGCAAACGCAACGTGCGCT
GCGGGGACCAAAACAGCGCTGCAGGAGGGTTCCGAATGCTAAAGCCTGA
UFO10044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42699-RC | 4296 | CG42699-RC | 362..1449 | 8..1095 | 5105 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5764914..5765595 | 8..689 | 3395 | 99.9 | Plus |
| X | 23542271 | X | 5784439..5784803 | 689..1055 | 1550 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:39:15 has no hits.
UFO10044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:34 Download gff for
UFO10044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42699-RC | 332..1409 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:18 Download gff for
UFO10044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42699-RC | 354..1431 | 1..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:20 Download gff for
UFO10044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42699-RC | 354..1431 | 1..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:20 Download gff for
UFO10044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5764906..5765595 | 1..689 | 99 | -> | Plus |
| X | 5784440..5784827 | 690..1078 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:18 Download gff for
UFO10044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5658939..5659628 | 1..689 | 99 | -> | Plus |
| arm_X | 5678473..5678860 | 690..1078 | 96 | | Plus |
