UFO10045.5prime Sequence
1071 bp (964 high quality bases) assembled on 2011-10-19
> UFO10045.5prime
CAGTCGACATGCTAGCCAACGATTCTGCAACGACTGACAGCGAGGTGTCC
ACACCGCCGTCGTCGAGGAAAGATTTGGCAGATGGTGTTGCCGAGGGTGA
CAACGACAACGACATCGATACCGGCGACACGGACGCAAATGCGGATGAAG
ATGTGGATGCGGCTGCTGCCATTGCCCTGGAGGCCGAAGAGCGCGAGGAG
CTGCAACAGTTCATAAGCGAGCTGCGCGAGAAGATCGAGAGCAAGCGACA
GCTGCGCCTCCAAAACTCCACAATCGAGCTGCCCGGTGAGGAGTACTTCG
CCAAACTGGACTCCAATCTCAAAAAGAACACGGCATTCGTCAAGAAACTG
AAACTATTCACGGCCACACAGCTGGACGGACTATTGCGTGAGATATCTGC
TCTAAACCTGAGCAAATACATCTCGGAAATATGCGCCGCGCTGGTCGAGG
CCAAACTGAAAATGACTGATGTGCCGGCGGTGGTGACGCTGGCCTCTCGG
CTGCACTGCACATATGCCGACTTCGATGTCCATTTTCTGGAGGCCTGGCA
AAAGGCACTGAACATCAAGGCCACCGAGAAGATGGGCAATCCGAGCAAAC
TGCGCGTGGATCTTCGCCTGTTCGCCGAACTAGTCAGCTCTGGTGTGATC
CAAATGAAGCCCGGATTGGCCCAACTGGGTGTTGTTCTGGTGCATTTGAT
TGCCCTGGACAAGGATGACCACAGCAACTTCTCGATCATCCTCTCATTCT
GCCGGCACTGCGGCGAGGAGTACGCCGGCCTAGTGCCGCAAAAGATGCAA
CAGTTGGCCACCAAATACGGGGTGGAGGTGCCGAAATCCGACTTCCTGAC
TGCCGACAGCAGCTCAATCTGCGCACCATGCTTAAGGTTACTTCAGGCCC
TGTGCCAGCATGTCCTGCCCGAGCTGGCCGAACTGATGACATGACCAAGA
CATTCGCGCCACCATGAGTGCACGGTGAAATATCACGGAGAGCCGCGAGA
AGTGTGACTGATCAGCCGATCGATAGCTGCTGCCCTCCGCTCATCGCTTC
GACTGCTGGGTGACCTGCCCG
UFO10045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Upf2-RA | 5078 | CG2253-RA | 311..1384 | 8..1063 | 4750 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8074210..8075156 | 950..8 | 4475 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:39:19 has no hits.
UFO10045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:35 Download gff for
UFO10045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Upf2-RA | 314..1404 | 1..1071 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:21 Download gff for
UFO10045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Upf2-RA | 305..1395 | 1..1071 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:23 Download gff for
UFO10045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Upf2-RA | 305..1395 | 1..1071 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:23 Download gff for
UFO10045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8074072..8075162 | 1..1071 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:21 Download gff for
UFO10045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7968105..7969195 | 1..1071 | 96 | | Minus |
