UFO10047.5prime Sequence
666 bp (504 high quality bases) assembled on 2011-10-19
> UFO10047.5prime
CAGTCGACATGCTAAATTTAGGCAGTGCCAAAGTTGGCGCTCTGGAGGAG
GCCACCTCACCACCCCCCTTCTCCAAGGACGAGAGCTTCCAGCTGTTGGA
GCGGAGCCCCCACAATCCCGCCATATCACCCACCACCACTGTCCCGCTGG
AGCCCCCCTTCACCACCCCCCTAGCTCCCTTCGACATGGAGCTGATGAAG
CGCCACAATCTCCACGAGCGCTTAACGGGAAAGGAGAGCTTCTGGCGCGG
GCGCGACACTTCGCAGAGATTTCTGGACCAGGAGCAATTATCAGCATCGC
GTGAATCACTCGGTGCCGCCGACAAGAGAGCCCGGTTTGCAAAAAAGCAA
ACGCCCCCACGCTCCAAACTGCCAAAAATCTGCCCGAGCCCCAGGGGCCA
ATGGGCAAAAAGACCCAACTGGGGAACAGGACCAACCCCATCGAATCCCA
GCCCGCCTCCCCCTTCTGCCCAATGACTGATCCGGAATTTTGTTGAAGGG
GCAATTGTTAGGGCGGGCGTCCTACGGATGGATCGGGGAGTGCCAGCTGT
GCCCCAAGGGAGTTTCTAACCAGGGGGGGGCGGGGATTAAACACATTCAC
TTGTTTCTTTTGAAGGACTGCCGTTCCGGTCCATTGACTTTTGTTCCTGG
GCCTACAGGATCATTG
UFO10047.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| subdued-RD | 4118 | CG16718-RD | 308..914 | 9..663 | 2020 | 91.9 | Plus |
| subdued-RA | 4046 | CG16718-RA | 308..914 | 9..663 | 2020 | 91.9 | Plus |
| subdued-RF | 3603 | CG16718-RF | 132..399 | 350..663 | 380 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19642079..19642415 | 345..9 | 1670 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:38:02 has no hits.
UFO10047.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:28 Download gff for
UFO10047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16718-RD | 324..680 | 9..367 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:28:36 Download gff for
UFO10047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16718-RA | 308..664 | 9..367 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:50 Download gff for
UFO10047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| subdued-RA | 308..664 | 9..367 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:11:50 Download gff for
UFO10047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19639395..19639413 | 348..367 | 95 | <- | Minus |
| 3R | 19642078..19642415 | 9..347 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:28:36 Download gff for
UFO10047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15465117..15465135 | 348..367 | 95 | <- | Minus |
| arm_3R | 15467800..15468137 | 9..347 | 99 | | Minus |
