UFO10052.5prime Sequence
1112 bp (1010 high quality bases) assembled on 2011-10-19
> UFO10052.5prime
CAGTCGACATGTCCAAAACAGATACAGCTGCCGTGGAGGCAACCGAAGAG
AACTCGAACGAGACGACTTCAGATGCGGCCACCAGTTCATCCGGTGAAAA
GGAGGCTGAGTTCGACAACAAAATCGAGGCTGATCGCAGTAGGCGCTTTG
ATTTCCTGCTAAAGCAGACGGAGATATTCACCCACTTCATGACTAACAGC
GCTAAGAGTCCCACGAAGCCTAAGGGTAGACCCAAGAAGATCAAAGACAA
GGACAAGGAAAAGGATGTGGCCGATCATCGTCATCGCAAGACAGAGCAGG
AGGAGGATGAGGAGTTGCTGGCGGAAGACTCGGCCACCAAGGAGATCTTT
CGCTTCGATGCCTCACCCGCCTACATCAAAAGTGGAGAGATGCGTGACTA
CCAGATTCGCGGTCTTAACTGGATGATTTCGCTTTACGAAAATGGTATCA
ATGGAATTCTGGCCGATGAAATGGGTCTAGGAAAGACCCTGCAGACCATA
TCTCTGCTGGGTTACCTCAAGCATTTCAAAAATCAAGCTGGACCACACAT
CGTCATCGTGCCAAAGTCAACGCTTCAGAATTGGGTAAATGAGTTTAAAA
AGTGGTGTCCTTCCCTCAGAGCCGTCTGCCTTATTGGTGACCAGGACACC
CGTAACACCTTCATTAGAGATGTGCTCATGCCTGGCGAGTGGGACGTTTG
CGTGACCTCCTATGAGATGTGTATCCGCGAGAAGTCTGTATTCAAGAAGT
TCAACTGGCGCTATTTGGTCATCGACGAGGCGCATCGTATCAAGAACGAG
AAGTCGAAGCTGTCGGAGATTCTGCGAGAGTTTAAGACCGCTAATCGTCT
ACTTATCACGGGTACTCCGCTGCAGAATAACCTCCACGAGCTGTGGGCCC
TGCTTAATTTCCTGCTGCCCGATGTTGTTTAATTCGTCAGAGGATGTTTG
ACGAATGGTTCAGCACGAACACCCTGCCTGGGTGACGATGCATTGATTAC
GGCGTTTGCATGCGTGCTGAACTTTCTGCCTCGTCGTCTAAGGACGAGTG
GAAGAAGCGTCTGGAGCCGAGAGAAATGAAATATTTGGTGATCTATCAAT
GCACGCGCACTG
UFO10052.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Iswi-RC | 3585 | CG8625-RC | 211..1304 | 9..1097 | 5005 | 97.8 | Plus |
| Iswi-RB | 3541 | CG8625-RB | 167..1260 | 9..1097 | 5005 | 97.8 | Plus |
| Iswi-RA | 3647 | CG8625-RA | 273..1366 | 9..1097 | 5005 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12637655..12638134 | 530..1013 | 2205 | 99 | Plus |
| 2R | 25286936 | 2R | 12637339..12637593 | 275..529 | 1275 | 100 | Plus |
| 2R | 25286936 | 2R | 12637053..12637271 | 56..274 | 1095 | 100 | Plus |
| 2R | 25286936 | 2R | 12636943..12636990 | 9..56 | 240 | 100 | Plus |
| 3L | 28110227 | 3L | 15972580..15972650 | 920..850 | 190 | 84.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:39:52 has no hits.
UFO10052.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-15 11:39:37 Download gff for
UFO10052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iswi-RC | 161..1244 | 9..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:29:40 Download gff for
UFO10052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iswi-RA | 273..1356 | 9..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:38 Download gff for
UFO10052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Iswi-RA | 273..1356 | 9..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:38 Download gff for
UFO10052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12636943..12636990 | 9..56 | 100 | -> | Plus |
| 2R | 12637054..12637271 | 57..274 | 100 | -> | Plus |
| 2R | 12637339..12637593 | 275..529 | 100 | -> | Plus |
| 2R | 12637655..12638217 | 530..1087 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:29:40 Download gff for
UFO10052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8524448..8524495 | 9..56 | 100 | -> | Plus |
| arm_2R | 8524559..8524776 | 57..274 | 100 | -> | Plus |
| arm_2R | 8524844..8525098 | 275..529 | 100 | -> | Plus |
| arm_2R | 8525160..8525722 | 530..1087 | 96 | | Plus |
